PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00639.30
Common NameJCGZ_08565
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family NAC
Protein Properties Length: 335aa    MW: 38917.1 Da    PI: 4.4006
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00639.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM67.73.3e-2151412128
            NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpk.....kvkaeekewyfFskrdkkyatgkrknra.....tksgyWka 85 
                     pG++F+Ptdeel+++yL++kv+g+  ++e+  i+++d+y   ePw++ +     ++ +e++ ++fF+  ++k++++++ + +      ++g W+ 
  Jcr4S00639.30   5 HPGYKFRPTDEELISHYLHRKVNGELSPIENQiIRDCDLYGQdEPWHIWErfgglRL-EEDEGLFFFTALKRKSPNNTNCKNIsrrvgSTDGHWHC 99 
                    69***********************97776655******97659****753454332.367789*********998775444322233458****8 PP

            NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      + ++   + +  + +kk + + + +++  +   W m ey+l
  Jcr4S00639.30 100 ETSGRSANLEIEGFKATKKRFNYRN-SKRLDQDRCWNMLEYSL 141
                    8888888887788899*****9985.555557889******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-212152IPR003441NAC domain
PROSITE profilePS5100522.0094165IPR003441NAC domain
PfamPF023651.7E-166141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MMEIHPGYKF RPTDEELISH YLHRKVNGEL SPIENQIIRD CDLYGQDEPW HIWERFGGLR  60
LEEDEGLFFF TALKRKSPNN TNCKNISRRV GSTDGHWHCE TSGRSANLEI EGFKATKKRF  120
NYRNSKRLDQ DRCWNMLEYS LDFGNYVLCQ LKTSSKNPLQ KKKRKMVSWE PFLQSEPNKR  180
SRIHQELQEE DSVVTALPLV NLDGLLVDET TSAQIIDDEI FGDWLQDELV DSTDQEFQQV  240
RDMATIGLDG LPPLDLVDNE SFGNRSEPCT PAMLQDEPVD RIDQEFQQEN VDGLPVRDEA  300
ISHLFDDNSF GNWLESFAST MSQDAWPRDN SLFDD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7753570.0KC775357.1 Jatropha curcas NAC transcription factor 079 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020535361.10.0NAC domain-containing protein 67
RefseqXP_020535362.10.0NAC domain-containing protein 67
RefseqXP_020535363.10.0NAC domain-containing protein 67
RefseqXP_020535364.10.0NAC domain-containing protein 67
RefseqXP_020535365.10.0NAC domain-containing protein 67
TrEMBLR4NHS90.0R4NHS9_JATCU; NAC transcription factor 079
STRINGXP_002535107.19e-58(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55724133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17260.12e-15NAC domain containing protein 86
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  2. Wu Z, et al.
    Genome-Wide Analysis of the NAC Gene Family in Physic Nut (Jatropha curcas L.).
    PLoS ONE, 2015. 10(6): p. e0131890
    [PMID:26125188]