PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00647.30

Common Name

JCGZ_12335, LOC105639655

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

Dof

Protein Properties

Length: 298aa MW: 31817.3 Da PI: 9.1908

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00647.30	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124	4.7e-39	63	121	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++l+cprCds+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknk++ Jcr4S00647.30 63 SENLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKNT 121 57899***************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	9.8E-33	65	120	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	4.0E-25	66	117	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.544	66	120	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	68	104	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MIQELLGSAG LIGGERKISI RGTILEGTPS PSPSLSPSSS TTTTSTTSAA APTTATAANN 60 STSENLRCPR CDSSNTKFCY YNNYNLTQPR HFCKTCRRYW TKGGALRNVP IGGGCRKNKN 120 TTVSASVGKS SASKMKTMVS DIGRSSFGNG FDHHELSSSP IMWASPQNSH LLTLLRATHN 180 PNPSSNTLSN SLPVKEEGVM GTHLLTEQTT ALNPRTLGLD PLTQVPSLGI QELYQRLRSS 240 TNYYTDNNSH VILSNVGSSS TSTSSTILES SPVAGGELGY WNPTFSWSDL PTTNGAYP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012079164.1	0.0	dof zinc finger protein DOF5.3
Refseq	XP_020537282.1	0.0	dof zinc finger protein DOF5.3
TrEMBL	A0A067KJ60	0.0	A0A067KJ60_JATCU; Uncharacterized protein
STRING	POPTR_0007s11620.1	1e-135	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7219	32	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07640.1	5e-33	Dof family protein

Link Out ? help Back to Top
Entrez Gene	105639655

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]