PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00674.100
Common NameJCGZ_16069, LOC105631011
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C2H2
Protein Properties Length: 180aa    MW: 20607.5 Da    PI: 10.168
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00674.100genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.00145577123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ C++ F ++  L  H++ H
  Jcr4S00674.100 55 FPCNFCKRKFQSSQALGGHQNAH 77
                    89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.7E-45081IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.63E-65082No hitNo description
PfamPF139128.3E-65479IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.0115582IPR007087Zinc finger, C2H2
PROSITE patternPS0002805777IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MLLQSSLINK NKKIFGDTYF GGTGEGNSNE WLDLSTGPMD IEQASLSKTT SNKVFPCNFC  60
KRKFQSSQAL GGHQNAHKKE RGAMKRYQYE RHMAINEFFA SKRMTMSLNV HAHSLIDKKF  120
REEDGMIGKF KNVNQRFGAD WTTVRSEESI IAKWPGSFRL PSEEHKQPLD SLKVDLTLRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012068395.11e-134zinc finger protein 7
TrEMBLA0A067KZQ41e-133A0A067KZQ4_JATCU; Uncharacterized protein
STRINGXP_002510135.15e-71(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF252933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24625.16e-17zinc finger protein 7
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]