PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00706.50

Common Name

JCGZ_21458, LOC105649560

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

Dof

Protein Properties

Length: 321aa MW: 34862.1 Da PI: 9.6309

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00706.50	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.7	5.1e-38	38	97	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++ +kcprC+s ntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rk k++ Jcr4S00706.50 38 QNQPQKCPRCESLNTKFCYYNNYSLSQPRYFCKTCRRYWTQGGTLRNVPVGGGCRKGKRA 97 67899***************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-19	18	87	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	9.8E-33	40	96	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.705	42	96	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	44	80	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MQQDKGGGGG GGSEEIMKQN QDRRLKPMQG ENQPQQQQNQ PQKCPRCESL NTKFCYYNNY 60 SLSQPRYFCK TCRRYWTQGG TLRNVPVGGG CRKGKRAKAS SSASSSSSEN SRSHSQSQNI 120 VSTNTNSGNT ANPALRTKEL ASLISPSPAI SSMGPYYSGG GGGFLGSLAA IQSLNNHPIP 180 PQSSFSLNLP MNLAGDIGGP SNLSLLHGFN SIPSYGSQQQ QQIQQQRQFY QMGNRDTKST 240 GELPFYASSH HHQQQQHQNW HNHQAFISNN NPAIVSDTAL WSISTSTTTA STNRETTTTG 300 GSFSLNPADQ WHDLPGYGPS P

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012091628.1	0.0	dof zinc finger protein DOF5.4 isoform X1
Refseq	XP_012091629.1	0.0	dof zinc finger protein DOF5.4 isoform X1
Refseq	XP_020541314.1	0.0	dof zinc finger protein DOF5.4 isoform X1
TrEMBL	A0A067JB44	0.0	A0A067JB44_JATCU; Uncharacterized protein
STRING	POPTR_0004s04590.1	1e-105	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4145	32	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62940.1	3e-25	Dof family protein

Link Out ? help Back to Top
Entrez Gene	105649560

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]