PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00711.80
Common NameJCGZ_04019
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family RAV
Protein Properties Length: 312aa    MW: 35826.9 Da    PI: 9.3203
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00711.80genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP225.24.1e-084686147
            AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaai 47
                   s+++GV  +  +g W ++I+       + +r++lg+f ++++Aa a++
  Jcr4S00711.80 46 SKFRGVVPHQ-NGNWGCQIYA------NhQRIWLGTFKSEKDAAMAYD 86
                   79****8665.9******999......44**********99******9 PP
2B385.35.5e-27134230184
                    EEEE-..-HHHHTT-EE--HHH.HTT.............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                    f+k+ltpsdv+k++rlv+pkkfa ++             g +k  + +l+++d++ + W+++++y+++s++yv+t+GW++Fvk+++Lk++D++vF 
  Jcr4S00711.80 134 FQKELTPSDVGKLNRLVIPKKFAMKFfsrisessegnvvGANKLDDGQLSFYDKNMKLWKFRYCYWRSSQSYVFTRGWNRFVKEKQLKANDTIVFC 229
                    99*********************999****999999999777778889***********************************************7 PP

                    E CS
             B3  84 l 84 
                    l
  Jcr4S00711.80 230 L 230
                    6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.2E-114690IPR016177DNA-binding domain
CDDcd000186.19E-144686No hitNo description
Gene3DG3DSA:3.30.730.104.2E-124787IPR001471AP2/ERF domain
PROSITE profilePS5103213.3447104IPR001471AP2/ERF domain
SMARTSM003805.3E-64798IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.3E-31130233IPR015300DNA-binding pseudobarrel domain
CDDcd100178.92E-24133228No hitNo description
SuperFamilySSF1019363.27E-26133235IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.1E-20134239IPR003340B3 DNA binding domain
PROSITE profilePS5086313.126134252IPR003340B3 DNA binding domain
PfamPF023623.5E-24134231IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MIGKETMSVI SSGETSLTEE VSDSISSTYP LQASKRARHG GNVCTSKFRG VVPHQNGNWG  60
CQIYANHQRI WLGTFKSEKD AAMAYDIINM IKDGTYQSKF ADFIRTCLQS VETELKLMPV  120
KTQSTRRLTC KQLFQKELTP SDVGKLNRLV IPKKFAMKFF SRISESSEGN VVGANKLDDG  180
QLSFYDKNMK LWKFRYCYWR SSQSYVFTRG WNRFVKEKQL KANDTIVFCL CECWENSRVG  240
QGYYMIDVNN VERSIGLMES SNQNDAMGME LQLHLGQSAV CDYVRGERLM EAKPRHDDTN  300
RKSFRLFGTQ II
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A4e-2713022910101DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012071490.10.0AP2/ERF and B3 domain-containing transcription factor At1g50680 isoform X2
RefseqXP_020534718.10.0AP2/ERF and B3 domain-containing transcription factor At1g50680 isoform X2
RefseqXP_020534719.10.0AP2/ERF and B3 domain-containing transcription factor At1g50680 isoform X2
TrEMBLA0A067KR200.0A0A067KR20_JATCU; Uncharacterized protein
STRINGXP_002534427.11e-157(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50003156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.13e-73RAV family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]