PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00715.100

Common Name

JCGZ_18959, LOC105643502

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

FAR1

Protein Properties

Length: 769aa MW: 88002.2 Da PI: 6.6602

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00715.100	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.5	1.4e-20	59	152	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +fY+++Ak++GFs+r+++++ + + +t+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k+ +w+vt +++ HnHel Jcr4S00715.100 59 EFYCSFAKQCGFSIRRHRTRGKdGVGRGVTRRDFTCHRGGYPQMKPSEDGKMQRNRKSSRCGCQAYMRIVKRAdfdVPEWRVTGFSNIHNHELL 152 6*************9998874556679***************9***************98887676789***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-17	59	152	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.1E-23	275	366	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.767	539	587	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.1E-7	561	585	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.4E-6	562	589	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 769 aa Download sequence Send to blast
MSEGTSLMME SSENGTDISQ DDTGNMEEIP EDTILSRQTS VNLVPFIGQR FVSQDAAYEF 60 YCSFAKQCGF SIRRHRTRGK DGVGRGVTRR DFTCHRGGYP QMKPSEDGKM QRNRKSSRCG 120 CQAYMRIVKR ADFDVPEWRV TGFSNIHNHE LLKSSEVHLL PAYCTISPDD KSRICMFAKA 180 GMSVRQMLRL MELEKGVKLG CLPFTEIDVR NLLQSFRNVN RDNDAIDLIA MCKKLKDEDS 240 NFKYDFKIDG NNRLEHIAWS YASSVQLYEV FGDAVVFDTT HRLDAYDMIL GIWLGLDNHG 300 MTCFFSCVLL RDENMQSFSW ALKAFLDFMN KKAPQTIMTD QNMWLKEAIA MEMPETKHAF 360 CIWHIIAKFS DWFSALLGSC YDEWKTEFLR VYNLEFVNDF EEGWKEMVIK YGLHANKHVA 420 SLYALRTFWG LPYLRHYFFA GMMNTCQSES VNAIIQRFLS AQSQLDRFVE RVADIVDFNN 480 YAGVKAETQR KLQKVYLKTG SPIESHAASV LTPYAFNKLQ EELVLAPQYA SLPIDEYCYQ 540 VRHHTQMSGG CKVIWDPCQE HISCSCNRFE FLGILCRHVL RVLSTNNCFH IPDQYLPNRW 600 RDVSSSSTTR AHSERIQFLE SMASTLVTES IETEERLAVA CDQIAMVLSR IKELPRQTHD 660 ENAYNCPSDP LILPDVEDAD GIVQALAIGN SHDSINLGKL KERRPRDGND VSRKRRHCSG 720 PCCGQFGHDA SDCPIMGSDH LNGAALGIDN WVDLKIWRTV NFCKLGSCN

Sequence ? help Back to Top

Protein Sequence Length: 769 aa Download sequence Send to blast

MSEGTSLMME SSENGTDISQ DDTGNMEEIP EDTILSRQTS VNLVPFIGQR FVSQDAAYEF  60
YCSFAKQCGF SIRRHRTRGK DGVGRGVTRR DFTCHRGGYP QMKPSEDGKM QRNRKSSRCG  120
CQAYMRIVKR ADFDVPEWRV TGFSNIHNHE LLKSSEVHLL PAYCTISPDD KSRICMFAKA  180
GMSVRQMLRL MELEKGVKLG CLPFTEIDVR NLLQSFRNVN RDNDAIDLIA MCKKLKDEDS  240
NFKYDFKIDG NNRLEHIAWS YASSVQLYEV FGDAVVFDTT HRLDAYDMIL GIWLGLDNHG  300
MTCFFSCVLL RDENMQSFSW ALKAFLDFMN KKAPQTIMTD QNMWLKEAIA MEMPETKHAF  360
CIWHIIAKFS DWFSALLGSC YDEWKTEFLR VYNLEFVNDF EEGWKEMVIK YGLHANKHVA  420
SLYALRTFWG LPYLRHYFFA GMMNTCQSES VNAIIQRFLS AQSQLDRFVE RVADIVDFNN  480
YAGVKAETQR KLQKVYLKTG SPIESHAASV LTPYAFNKLQ EELVLAPQYA SLPIDEYCYQ  540
VRHHTQMSGG CKVIWDPCQE HISCSCNRFE FLGILCRHVL RVLSTNNCFH IPDQYLPNRW  600
RDVSSSSTTR AHSERIQFLE SMASTLVTES IETEERLAVA CDQIAMVLSR IKELPRQTHD  660
ENAYNCPSDP LILPDVEDAD GIVQALAIGN SHDSINLGKL KERRPRDGND VSRKRRHCSG  720
PCCGQFGHDA SDCPIMGSDH LNGAALGIDN WVDLKIWRTV NFCKLGSCN

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012084022.1	0.0	protein FAR1-RELATED SEQUENCE 11
Refseq	XP_012084023.1	0.0	protein FAR1-RELATED SEQUENCE 11
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A067K7T5	0.0	A0A067K7T5_JATCU; Uncharacterized protein
STRING	XP_002519184.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF594	30	113

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Link Out ? help Back to Top
Entrez Gene	105643502

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]