PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00722.40

Common Name

JCGZ_25526, LOC105646504

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

G2-like

Protein Properties

Length: 394aa MW: 44822.1 Da PI: 6.5117

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00722.40	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	90.3	1.7e-28	216	266	1	51
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 k+r+rWt++LHe+Fve+v++LGG+ekAtPk+il+lm+ +gLt+ hvkSHLQ Jcr4S00722.40 216 KTRIRWTQDLHEKFVECVNRLGGAEKATPKAILKLMDTDGLTIFHVKSHLQ 266 68************************************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.995	213	273	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.0E-24	214	266	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.51E-14	214	267	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.1E-21	216	268	IPR006447	Myb domain, plants
Pfam	PF00249	3.1E-7	220	267	IPR001005	SANT/Myb domain
Pfam	PF14379	2.3E-20	305	350	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence Send to blast
MNTSKIDFQE RVQQNHGVIS DFALNSLQCF DSQQNWKMGV PILTQVMEEE QQQHQDFRHD 60 KSSTSIMSRF ESPASAFYAT EKYMGFPLYD CQVGAYSKSY DSQFTSQNSL VQNYPISSME 120 QRSDHSLESR NSLLSIYKGP CSTGNKLHQL ERNKLLNNGA AIHLSIPFHG DQDYRIGCNP 180 CSSPFGQMGF PLQREIQSSR LTSRNPVATG AVLSSKTRIR WTQDLHEKFV ECVNRLGGAE 240 KATPKAILKL MDTDGLTIFH VKSHLQVILN IELQSNLPDP SEGKAEKRTS INEVPQIDAR 300 TSGLQITEAL QLQLDVQRRL HEQLEIQKNL QLRIEEQGRQ LQRMFDQQQR KNQTLFNTQN 360 SDPNSPDESE FSLDDFEVSI AEGSNSTHFK SKIS

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence Send to blast

MNTSKIDFQE RVQQNHGVIS DFALNSLQCF DSQQNWKMGV PILTQVMEEE QQQHQDFRHD  60
KSSTSIMSRF ESPASAFYAT EKYMGFPLYD CQVGAYSKSY DSQFTSQNSL VQNYPISSME  120
QRSDHSLESR NSLLSIYKGP CSTGNKLHQL ERNKLLNNGA AIHLSIPFHG DQDYRIGCNP  180
CSSPFGQMGF PLQREIQSSR LTSRNPVATG AVLSSKTRIR WTQDLHEKFV ECVNRLGGAE  240
KATPKAILKL MDTDGLTIFH VKSHLQVILN IELQSNLPDP SEGKAEKRTS INEVPQIDAR  300
TSGLQITEAL QLQLDVQRRL HEQLEIQKNL QLRIEEQGRQ LQRMFDQQQR KNQTLFNTQN  360
SDPNSPDESE FSLDDFEVSI AEGSNSTHFK SKIS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	3e-19	216	266	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	3e-19	216	266	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	3e-19	216	266	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-19	216	266	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-19	216	266	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-19	216	266	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	3e-19	216	266	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	3e-19	216	266	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	3e-19	216	266	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	3e-19	216	266	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	3e-19	216	266	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	3e-19	216	266	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020539937.1	0.0	myb family transcription factor PHL5 isoform X1
TrEMBL	A0A067JX82	0.0	A0A067JX82_JATCU; Uncharacterized protein
STRING	cassava4.1_008485m	1e-173	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3740	34	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	2e-62	G2-like family protein

Link Out ? help Back to Top
Entrez Gene	105646504

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]