PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00733.70
Common NameJCGZ_10034, LOC105631738
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family M-type_MADS
Protein Properties Length: 254aa    MW: 29047.4 Da    PI: 8.7132
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00733.70genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.31.1e-141250442
                   -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
         SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                   +n+s r  tf kR+ng++KK +EL +LC+++++ ii+ +
  Jcr4S00733.70 12 SNDSARRATFKKRKNGLIKKVSELTTLCGIDACAIIYNP 50
                   89**********************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-22160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.47149IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.01E-23295IPR002100Transcription factor, MADS-box
CDDcd002663.64E-29283No hitNo description
PRINTSPR004041.3E-7323IPR002100Transcription factor, MADS-box
PfamPF003191.9E-161251IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-72338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MTRKKVKLVY MSNDSARRAT FKKRKNGLIK KVSELTTLCG IDACAIIYNP YDSQPEVWPS  60
PSGVQCVLAQ LKNMPEMEQI KKMESQESFI RQRISKCNEQ LKKQITENHK KEVTKLMFQG  120
LTGKIVLNNL NMTDLNDLGC LIDQNLKEIY IKIETLKKQR NTDNKISQTV APASSLLLPP  180
QSGVARPSGG EVGRLQNNNF EVMNSNNMDA MQRQEWITDW IDPQEHMVFG DDEMMIPFGD  240
NINQNSLWSN AFFP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLVYMSNDSARRATFKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012069301.10.0agamous-like MADS-box protein AGL80
SwissprotQ9FJK31e-55AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A067LNZ30.0A0A067LNZ3_JATCU; Uncharacterized protein
STRINGcassava4.1_022570m9e-98(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.15e-50AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]