PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00768.100
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ARF
Protein Properties Length: 546aa    MW: 60920.8 Da    PI: 7.2881
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00768.100genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3764.1e-2423123198
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+kvlt sd++++g +++ +k+a+e+       +++  +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF   + ++
  Jcr4S00768.100  23 FCKVLTASDTSTHGGFSVLRKHATEClpqldmTLPT-PTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFL--RGEN 114
                     99**************************99975554.4469************************************************..4499 PP

                     E..EEEEE- CS
              B3  90 felvvkvfr 98 
                     +el+v+v+r
  Jcr4S00768.100 115 GELRVGVRR 123
                     99*****98 PP
2Auxin_resp744.1e-25149208162
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGt 62 
                     a+ha+st++ F v+Y+Pr+  s+F+++++k+++a+++k++vGmRfkm+fe+eds+err+sG 
  Jcr4S00768.100 149 ASHAVSTQTLFVVYYKPRT--SQFIISLNKYLDAVNNKFAVGMRFKMRFEGEDSPERRFSGN 208
                     789***************6..9************************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.28E-4011152IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.0E-4016138IPR015300DNA-binding pseudobarrel domain
CDDcd100171.05E-2021123No hitNo description
PfamPF023622.6E-2223123IPR003340B3 DNA binding domain
PROSITE profilePS5086312.25223125IPR003340B3 DNA binding domain
SMARTSM010195.7E-2323125IPR003340B3 DNA binding domain
PfamPF065073.2E-22149208IPR010525Auxin response factor
PROSITE profilePS5174524.373434515IPR000270PB1 domain
SuperFamilySSF542771.42E-12440510No hitNo description
PfamPF023092.7E-7480523IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
NLSLLVLIHA QLSHQRRPTV HSFCKVLTAS DTSTHGGFSV LRKHATECLP QLDMTLPTPT  60
QELVAKDLHG YEWRFKHIFR GQPRRHLLTT GWSTFVTSKR LVAGDSFVFL RGENGELRVG  120
VRRVARQQSS MPSSVISSQS MHLGVLATAS HAVSTQTLFV VYYKPRTSQF IISLNKYLDA  180
VNNKFAVGMR FKMRFEGEDS PERRFSGNNC LEFVQWDEPA SIPRPDRVSP WEIEPFAASV  240
PPSMTQPVAV KNKRPRPLVE VHTLDFIFNC IATLEFSIDT QSDINSHSNS ISRSPTEGGW  300
LSSPRVNVSQ HLFQEATEDS KSVSNWPVVS GYSTPQSAKF KNDPILEPIE KGRKSEGTTS  360
YRLFGIELIN HSTSSLPIEK TPAHPASVSS GTIEGHVMST LSASDSDQKS DVSKEKKSEE  420
LQVSPKDVQS RQSSASTRSR TKGVAVGRAI DLSMIKGYDQ LLDELEDMFD IKGQLHPRDK  480
WEIVYTDDEG DMMLVGDDPW PEFCNMVRRI FICSSQDVKK MTPGSKLPVF SLEGEGTVLS  540
SETADN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-10819236120355Auxin response factor 1
4ldw_A1e-10819236120355Auxin response factor 1
4ldw_B1e-10819236120355Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1252256KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012086686.10.0auxin response factor 9
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A067K0G30.0A0A067K0G3_JATCU; Auxin response factor
STRINGXP_002518850.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15113396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9