PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00803.60

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

LBD

Protein Properties

Length: 234aa MW: 25895.5 Da PI: 8.6859

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00803.60	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	131	5e-41	46	145	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+k+l ++pe++r d+++slvyeA+ r+rdPvyG++g i++l+qq+++l+ el++ Jcr4S00803.60 46 PCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKMLMEVPESQRADTANSLVYEANLRLRDPVYGCMGAISALHQQIQSLQIELNS 141 7**********************************************************************************************9 PP DUF260 97 lkee 100 l++e Jcr4S00803.60 142 LRAE 145 9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.378	45	146	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.9E-41	46	143	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016020	Cellular Component	membrane

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MSRDRERFEE IAKKIKRERE KTDAYYEMGR RHILTPPGLI LNTITPCAAC KLLRRRCAEE 60 CPFSPYFSPH EPQKFAAVHK VFGASNVSKM LMEVPESQRA DTANSLVYEA NLRLRDPVYG 120 CMGAISALHQ QIQSLQIELN SLRAEIIKYK YRQATNSNNT ITSTNDSVLA SETLSSIVAP 180 PSQPPPPLPL MPPPPSVVVS SPSSSSISSL YTPPTSSSTG YSSNISSVNV PYFD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-42	45	149	10	114	LOB family transfactor Ramosa2.1
5ly0_B	2e-42	45	149	10	114	LOB family transfactor Ramosa2.1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00283	DAP	Transfer from AT2G30340	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012078368.1	1e-171	LOB domain-containing protein 13
Swissprot	Q9AT61	3e-79	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A067LBI7	1e-147	A0A067LBI7_JATCU; Uncharacterized protein
STRING	POPTR_0013s15220.1	9e-98	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2298	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	4e-74	LOB domain-containing protein 13

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]