PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00845.160
Common NameJCGZ_14613, LOC105643210
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 247aa    MW: 27466.2 Da    PI: 6.8881
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00845.160genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.4e-1980130155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     ++y+GVr ++ +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g
  Jcr4S00845.160  80 PKYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAIKG 130
                     79*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.17E-3480140No hitNo description
PfamPF008471.2E-1380130IPR001471AP2/ERF domain
SuperFamilySSF541716.34E-2281139IPR016177DNA-binding domain
PROSITE profilePS5103223.52581138IPR001471AP2/ERF domain
SMARTSM003802.2E-3881144IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-3281139IPR001471AP2/ERF domain
PRINTSPR003671.9E-108293IPR001471AP2/ERF domain
PRINTSPR003671.9E-10104120IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MDKHINLEID APENSLTSSS SSSSSPSSSS SSSSSSASNK GSRKAYFQEL ENGNESKKKQ  60
KMSTSSADHN ETNRNNNKHP KYRGVRMRSW GKWVSEIREP RKKSRIWLGT YPTAEMAARA  120
HDVAALAIKG NSAYLNFPEL VHELPRPVTK SPKDIQAAAA KAALSETTQF QLQAEAHQLI  180
SSNTNTTSAM DNSNTQESDD TLFDLPDLFI DGVDLKSNGF CQYSPSWHLC TADTGFRVEE  240
PYIWEYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-18781381172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF5021321e-132JF502132.1 Jatropha curcas clone Jcuint145 SSR sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012083682.10.0ethylene-responsive transcription factor ERF034
SwissprotQ8LBQ72e-67ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A067JY820.0A0A067JY82_JATCU; Uncharacterized protein
STRINGcassava4.1_021971m3e-94(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.19e-66ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]