PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00872.50

Common Name

JCGZ_26191, LOC105648547

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

bHLH

Protein Properties

Length: 252aa MW: 28434.5 Da PI: 9.0695

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00872.50	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.6	5.4e-14	77	128	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + h e+Er+RR+++ + ++ Lr+llP ++K s ++ +Av+YIk+Lq Jcr4S00872.50 77 KLIHREIERQRRQEMATLYSSLRSLLPLeY---IKGKRSTSDHMNEAVNYIKHLQ 128 5569**********************77...*******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.01E-15	74	148	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.09E-12	75	129	No hit	No description
PROSITE profile	PS50888	14.589	75	127	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.6E-12	77	146	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.7E-11	78	128	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.6E-6	81	133	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MFPLHQGNEL CFQISSNPHN QEQIPQDLIL AQSALYCHGT ADITDNMGKS RRRKSISIDN 60 NDESATAMDK RIGNKKKLIH REIERQRRQE MATLYSSLRS LLPLEYIKGK RSTSDHMNEA 120 VNYIKHLQKG IKELKAKRDH FKQQNNLTGI PSQIVSGSSS NCTSPSKEVI VRPCSGGIEI 180 VLSSGLREQD LTLSRLLQVL LEAEISVVNC VSTKVNERVF HTIQAEVNDP TCLNLSKLQQ 240 KLTPLVPRYN DC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	49	54	SRRRKS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012090357.1	0.0	transcription factor bHLH118
Swissprot	Q9FLI0	3e-43	BH120_ARATH; Transcription factor bHLH120
TrEMBL	A0A067JQS6	0.0	A0A067JQS6_JATCU; Uncharacterized protein
STRING	cassava4.1_030073m	1e-109	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF792	33	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51790.1	2e-37	bHLH family protein

Link Out ? help Back to Top
Entrez Gene	105648547

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]