PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00872.60
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family bHLH
Protein Properties Length: 244aa    MW: 28010.5 Da    PI: 6.7889
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00872.60genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.51e-1271123155
                    CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                    +r +h  +ErrRR+++ + +  Lr llP       ++K   ++ + +Av+YIk+Lq
  Jcr4S00872.60  71 KRIMHRDVERRRRQEMATLYTCLRNLLPFeY---VKGKRAISDHVDQAVKYIKHLQ 123
                    799**************************77...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-1467139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.70E-1069127No hitNo description
PROSITE profilePS5088813.07170122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-971126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-971123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.0E-576128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MFPSDKNNSQ LSFQISFNQE DTIPQDLNRI LGQSSAHSFD HPNNIANARQ PNPRRRFSPK  60
NIDDDDDDSN KRIMHRDVER RRRQEMATLY TCLRNLLPFE YVKGKRAISD HVDQAVKYIK  120
HLQEKIEEFS LRRDEIKRSS NLKVVGPEIT ENKLNRSPST NVVVRSSFVG VEVVINSGFG  180
EQDLQLSKVL ELLLEEGLNV VNCVSTNVQQ RVIHTIQCEV SYLTCIDVYE LQNKLIEAIP  240
SSSA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17182RIMHRDVERRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012090753.11e-180transcription factor bHLH36-like
TrEMBLA0A2C9UJB21e-83A0A2C9UJB2_MANES; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79233125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.11e-30bHLH family protein