PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00892.10

Common Name

JCGZ_21554

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

bHLH

Protein Properties

Length: 255aa MW: 28341.4 Da PI: 9.3409

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00892.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.8	1.1e-09	77	112	3	40
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STC CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsK 40 ++h+e+ErrRR+riN +++Lr l+P ++ k l K Jcr4S00892.10 77 KSHSEAERRRRERINAHLATLRGLVPCT--EKVKELKK 112 58************************96..24444666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.483	74	133	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.0E-7	77	112	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-8	77	111	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.3E-8	78	113	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MVSYCNYNAN SSSGIGYFNT LDPFSFRLQG FNGVLRDGSM VSQALVLDNE KGELVKAPVT 60 RVGKKVPSEA KALAALKSHS EAERRRRERI NAHLATLRGL VPCTEKVKEL KKKAIDASKG 120 LLIPMDDDEV KVETFDNGAE DGTLCFKASI CCDYRPELMY DIKQAVNALQ LKMVDVEIST 180 LGGQLKNVLF LTSYRKRKKN VTDDTETQQI LVNSIHQALN SVLEKGSISP EYSPRTTLPN 240 KRRRVTFFDA SSLSS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	82	87	ERRRRE
2	194	198	RKRKK
3	240	244	KRRRV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012091752.2	1e-172	transcription factor bHLH30
TrEMBL	A0A067JE92	0.0	A0A067JE92_JATCU; Uncharacterized protein
STRING	cassava4.1_025964m	1e-114	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8986	31	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	2e-27	bHLH family protein

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]