PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00925.50

Common Name

JCGZ_03351, LOC105649208

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

LBD

Protein Properties

Length: 228aa MW: 25007.4 Da PI: 8.9625

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00925.50	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	134.6	3.8e-42	42	141	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++g i++lqqq+++l+ael++ Jcr4S00925.50 42 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLQAELNA 137 7**********************************************************************************************9 PP DUF260 97 lkee 100 +++e Jcr4S00925.50 138 IRAE 141 9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.747	41	142	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.1E-42	42	139	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MSRERERFDE IGKKIKRETD ASSQMGRRHM LGPPGTLNTI TPCAACKLLR RRCAQECPFS 60 PYFSPHEPQK FASVHKVFGA SNVSKMLMEV PESQRADAAN SLVYEANVRL RDPVYGCMGA 120 ISALQQQVQS LQAELNAIRA EILKYKYREA NIIPSSHQHI ALLSSGAVSV VTQSPSLTPQ 180 QPPQPPPPPP PPPPLPPTSS SSSSIYTHQP TSAADYTTIS NEHVSFFG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-47	34	156	3	125	LOB family transfactor Ramosa2.1
5ly0_B	8e-47	34	156	3	125	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012091188.1	1e-168	LOB domain-containing protein 15
Swissprot	Q8L5T5	2e-89	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A067JNV9	1e-166	A0A067JNV9_JATCU; Uncharacterized protein
STRING	cassava4.1_031813m	1e-129	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2298	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	3e-90	LOB domain-containing protein 15

Link Out ? help Back to Top
Entrez Gene	105649208

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971] Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]