PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00937.110
Common NameJCGZ_10021
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family B3
Protein Properties Length: 177aa    MW: 20624.3 Da    PI: 9.7051
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00937.110genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.41.3e-13541173299
                     --SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  32 esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                       +t +l  ++g++Wev++  +k+++ +++ kGW++Fv++n ++ +  + F ++g+s+f  +v +f+ 
  Jcr4S00937.110  54 IARTARLSLRDGKVWEVEV--TKNDKYIWFDKGWSDFVEDNSICHRYLLSFDYKGNSNF--HVIIFDP 117
                     45688889999********..**********************************9999..9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010192.8E-628118IPR003340B3 DNA binding domain
CDDcd100176.74E-1037116No hitNo description
Gene3DG3DSA:2.40.330.108.3E-1638118IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-1538125IPR015300DNA-binding pseudobarrel domain
PfamPF023624.5E-1054116IPR003340B3 DNA binding domain
PROSITE profilePS5086310.65960118IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MARRPSAGGG RSWRSCWPSI KRGRGRPFGK SNPSSESIPS KLFVKRLGIE LSDIARTARL  60
SLRDGKVWEV EVTKNDKYIW FDKGWSDFVE DNSICHRYLL SFDYKGNSNF HVIIFDPSTF  120
EINYPNSDFE NENEKVGREN HDPERDDFRK RTKLDQARGK MTMTEMRCAC KECKSKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012072584.13e-97B3 domain-containing transcription factor VRN1
TrEMBLA0A067LCH71e-128A0A067LCH7_JATCU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-15B3 family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]