PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00968.20
Common NameJCGZ_17231, LOC105638123
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 186aa    MW: 20552.9 Da    PI: 4.7742
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00968.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.5e-191363155
            AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                   s y+GVr +k +g+Wv+eIr+p   gk++r++lg+f t+e+Aa+a++ a++ ++g
  Jcr4S00968.20 13 SIYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSFETPEMAAAAYDVAALHFRG 63
                   57*****999.**********8...557***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.9E-121363IPR001471AP2/ERF domain
SuperFamilySSF541715.89E-231372IPR016177DNA-binding domain
CDDcd000182.46E-241373No hitNo description
Gene3DG3DSA:3.30.730.102.0E-321472IPR001471AP2/ERF domain
PROSITE profilePS5103223.8941471IPR001471AP2/ERF domain
SMARTSM003806.0E-401477IPR001471AP2/ERF domain
PRINTSPR003676.3E-131526IPR001471AP2/ERF domain
PRINTSPR003676.3E-135373IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MQEQTSSQSG TPSIYRGVRK RKWGKWVSEI REPGKKTRIW LGSFETPEMA AAAYDVAALH  60
FRGREAKLNF PELVNELPKP ISSNGDDIRM AAHEAAIRLR PPEREGGSGG SSGGSNSNSG  120
GSSSTNVVGP VTVRLSQSQI QAINESPLDS PKMWMQMAMA EEAMMFCNDF EDDEWDNMQN  180
DSLWDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-181575667ATERF1
3gcc_A8e-181575667ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00227DAPTransfer from AT1G71450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012077255.11e-136ethylene-responsive transcription factor ERF021
SwissprotQ9C9I23e-64ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A067LMI61e-135A0A067LMI6_JATCU; Uncharacterized protein
STRINGcassava4.1_025138m2e-92(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17773191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.12e-61ERF family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]