PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S01070.60

Common Name

JCGZ_12598, LOC105639905

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

M-type_MADS

Protein Properties

Length: 166aa MW: 18142 Da PI: 10.3992

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S01070.60	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	47.7	2e-15	18	53	11	46
HHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 11 vtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 +f+kRr i+KKA+E+++LC++e av+ifs+ k Jcr4S01070.60 18 HSFTKRRSSIFKKASEVCTLCAVETAVVIFSPGSKA 53 59*****************************97765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	7.6E-10	1	59	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.45E-16	13	75	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	13.876	19	60	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.9E-14	19	56	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.0E-7	22	37	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.0E-7	37	58	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MVLKKTTTKM TLGENGRHSF TKRRSSIFKK ASEVCTLCAV ETAVVIFSPG SKAFSFGHPS 60 FDATMNRLGN PGDPHSSVAK HMAEHEANTG ALNKQYADVH QELALNLNEV LTMKAYLEKV 120 KAILVKRLVE LQIRNFGLSA NSAAAYGPIV FNPKGIGAPP RELRFL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012079485.1	1e-114	agamous-like MADS-box protein AGL62
Refseq	XP_012079486.1	1e-114	agamous-like MADS-box protein AGL62
Refseq	XP_020537311.1	1e-114	agamous-like MADS-box protein AGL62
TrEMBL	A0A067K7P1	1e-113	A0A067K7P1_JATCU; Uncharacterized protein
STRING	XP_002531994.1	1e-44	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF16391	6	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	1e-22	AGAMOUS-like 62

Link Out ? help Back to Top
Entrez Gene	105639905

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]