PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01124.50
Common NameJCGZ_01363, LOC105647008
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family TALE
Protein Properties Length: 406aa    MW: 46014.6 Da    PI: 6.5846
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01124.50genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox32.41.6e-102492861954
                    HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
       Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                    Fe   ++yp+ +e++ LA+++gL+ +qV++WF N R +
  Jcr4S01124.50 249 FEHflHPYPNDSEKQILAQQTGLSRTQVSNWFINARVR 286
                    665559******************************88 PP
2BELL81.21.3e-26111182172
           BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                    +r+e+  k +kL  +l+eV++rYk y++q++ v++sFe+vaglg+a+p++  A k +S+hF  Lk+ + +qi
  Jcr4S01124.50 111 DRAEHGWKNSKLTFMLDEVYRRYKLYCQQMESVVASFETVAGLGNAAPFVCYAIKLMSKHFSFLKNVLLDQI 182
                    588999**************************************************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.3E-2759180IPR006563POX domain
PfamPF075264.3E-2764177IPR006563POX domain
PROSITE profilePS5007112.131227290IPR001356Homeobox domain
CDDcd000864.75E-13230291No hitNo description
SMARTSM003891.0E-11230294IPR001356Homeobox domain
SuperFamilySSF466892.82E-18233300IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.3E-28233294IPR009057Homeodomain-like
PfamPF059206.5E-18247286IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MNPSFQNPKD LSLSLSFQLE SQRYNDNSSN VVSIFGDCLK QNSNNNGGIR SSVPLGPFTG  60
YASILKSSRF LKPAQQILDD LCGSVNYEVF DFSWDFLRQS EVMRESVAFS DRAEHGWKNS  120
KLTFMLDEVY RRYKLYCQQM ESVVASFETV AGLGNAAPFV CYAIKLMSKH FSFLKNVLLD  180
QIHFTGKISD DGNINNTTNE KFPRFCAVDE HGLQNQNPSL NLSFLQHPVW RSQRGLPDHA  240
VAVLKTWLFE HFLHPYPNDS EKQILAQQTG LSRTQVSNWF INARVRLWKP MVEEVYKLSS  300
QQAQVPLEAV NTNVTEPSDF SFQKLPQTTY DHSPSKRSRN ELADVSVQSQ YQASNGIGVS  360
LALGLHDSNG IDLSSPFPVN MEMVRMMDST TANFEAQNQH FPFGKD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-15236294563Homeobox protein Meis2
3k2a_B2e-15236294563Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012088370.10.0BEL1-like homeodomain protein 9
TrEMBLA0A067LCA50.0A0A067LCA5_JATCU; Uncharacterized protein
STRINGXP_002524245.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28103373
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.12e-72TALE family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]