PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01144.40
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family WOX
Protein Properties Length: 246aa    MW: 28357.1 Da    PI: 8.2751
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01144.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.92.3e-201170357
                   --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
       Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                   +R+++t+eql +Leel+++  r+p+a+++++++++l    +++ ++V++WFqN++a++++
  Jcr4S01144.40 11 SRWCPTPEQLMILEELYRNgIRTPNASQIQRITAHLslygKIEGKNVFYWFQNHKARDRQ 70
                   8*****************99*************************************996 PP
2Wus_type_Homeobox120.76.1e-39971264
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       +++RW+PtpeQ++iLeely++G+rtPn+++iqrita+L+ yGkie+kNVfyWFQN+kaR+rqk
      Jcr4S01144.40  9 SSSRWCPTPEQLMILEELYRNGIRTPNASQIQRITAHLSLYGKIEGKNVFYWFQNHKARDRQK 71
                       689***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.252671IPR001356Homeobox domain
SuperFamilySSF466895.99E-11774IPR009057Homeodomain-like
SMARTSM003892.5E-6875IPR001356Homeobox domain
PfamPF000463.9E-181170IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.4E-71170IPR009057Homeodomain-like
CDDcd000862.59E-51271No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009908Biological Processflower development
GO:0009943Biological Processadaxial/abaxial axis specification
GO:0009947Biological Processcentrolateral axis specification
GO:0010865Biological Processstipule development
GO:0048513Biological Processanimal organ development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MSPSSTTSSS SRWCPTPEQL MILEELYRNG IRTPNASQIQ RITAHLSLYG KIEGKNVFYW  60
FQNHKARDRQ KLRRKLIKQL QQPQQQLFYP YHDHQLHQNM SNYHHHHHHH LLGSFFDSPP  120
PTATASSSAF LSYHDTAGFL PQGGLEMMNH PWKVEIPQNI QMENSMMRIY GQDWMMMMEG  180
GPTLPQQDLL KHLNFSPITT TNLKEESTGT LSASNNSSEI ITFLPLASLS LCKPEAAYPY  240
KWDTST
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012065128.11e-132WUSCHEL-related homeobox 3
TrEMBLA0A067LAA91e-131A0A067LAA9_JATCU; Uncharacterized protein
STRINGXP_009354530.11e-62(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106322940
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.12e-33WOX family protein