PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01157.30
Common NameJCGZ_23162, LOC105647371
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family M-type_MADS
Protein Properties Length: 259aa    MW: 29463.8 Da    PI: 9.3199
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01157.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.48e-181050242
                   ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
         SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                   +i n+s r+ t+ kR++g++KK +ELS+LC+++++ ii+s+
  Jcr4S01157.30 10 FITNDSARKATYKKRKKGLMKKVSELSTLCGIDACAIIYSP 50
                   89**************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.484149IPR002100Transcription factor, MADS-box
SMARTSM004327.5E-25160IPR002100Transcription factor, MADS-box
CDDcd002666.44E-22284No hitNo description
SuperFamilySSF554555.62E-26295IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-9323IPR002100Transcription factor, MADS-box
PfamPF003192.1E-181051IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MTRKKVKLAF ITNDSARKAT YKKRKKGLMK KVSELSTLCG IDACAIIYSP YDSQPEVWPS  60
PSGVQQVLSQ FKNMPEMEQS KKMVTQESFT RQRISKISEQ LKKQRKDNRE LEMTQVMFQG  120
LAGKLNLSNL NMMDLNDLGW LIDQYLKEIY KKFETANKNP NGIISQVAAP TAPPPLPPPP  180
PSALAGSSDG QVERLQNNNF EMMNSNADPM QRQPWIMDWM NPQEQMGFGG EEMMMPFGEN  240
MNQTSWSNAF FNDEGGRFA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAFITNDSARKATYKKRK
22125KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012088817.10.0agamous-like MADS-box protein AGL80
SwissprotQ9FJK34e-70AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A067JUW40.0A0A067JUW4_JATCU; Uncharacterized protein
STRINGcassava4.1_022570m1e-105(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-61AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]