PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S01162.90

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

TCP

Protein Properties

Length: 206aa MW: 21394.3 Da PI: 5.1988

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S01162.90	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	84.5	2.6e-26	1	131	24	116
TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.............................. 88 +++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s++ ++ +++g Jcr4S01162.90 1 MPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStVSVSRVRPED-DNNGgkddsgvsvgptvgslvgtaaapggfwavp 95 9******************************************999988853333333333.2222357777889999999999999999999999 PP TCP 89 .....................kaaksaakskksqksaasalnlakesra 116 +a++s+ l +++++ a Jcr4S01162.90 96 arpdfwgfaaappdmvvqssvAAQQSS-------------LFVQQQQAA 131 999999986665555554332222222.............222222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.4E-20	1	61	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	20.861	1	39	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MPIICAARVF QLTRELGHKS DGQTIEWLLR QAEPSIIAAT GTGTTPASFS TVSVSRVRPE 60 DDNNGGKDDS GVSVGPTVGS LVGTAAAPGG FWAVPARPDF WGFAAAPPDM VVQSSVAAQQ 120 SSLFVQQQQA AAAAAAAAMG EASAARVGNY LPGHLNLLAS LSGGPGSSGR REEEPPGWFC 180 LKGCLLQELE LMRKLSLFAA IWLVIF

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012070794.1	9e-90	transcription factor TCP7
Swissprot	Q9FMX2	8e-63	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A067LCW2	2e-88	A0A067LCW2_JATCU; Uncharacterized protein
STRING	Gorai.005G211900.1	9e-75	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5469	31	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	1e-33	TCP family protein