PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01202.10
Common NameJCGZ_22363, LOC105628609
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family NAC
Protein Properties Length: 156aa    MW: 18056.9 Da    PI: 9.6075
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01202.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM150.67.5e-47201472128
            NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 
                     pGfrFhPt+eel+++yLkk v gk++   ++i+ +diy++ PwdLp  +k++e+ewyfF++r++k+ +g r++r+t++gyWkatg+d+++ +   
  Jcr4S01202.10  20 LPGFRFHPTEEELLDFYLKKMVLGKHFCS-NIITFLDIYHHAPWDLPGLAKTGEREWYFFVPRERKNGHGGRPSRITATGYWKATGSDRPIRCLtd 114
                    59************************888.89***************8889999*************************************98766 PP

            NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     ++l gl+ktLvfy+grapkg ktdWvm+eyrl
  Jcr4S01202.10 115 PKRLLGLRKTLVFYTGRAPKGCKTDWVMNEYRL 147
                    7788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-5215150IPR003441NAC domain
PROSITE profilePS5100548.51219156IPR003441NAC domain
PfamPF023651.3E-2421147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MEFGQLPEVY VSPSMEFGQL PGFRFHPTEE ELLDFYLKKM VLGKHFCSNI ITFLDIYHHA  60
PWDLPGLAKT GEREWYFFVP RERKNGHGGR PSRITATGYW KATGSDRPIR CLTDPKRLLG  120
LRKTLVFYTG RAPKGCKTDW VMNEYRLPTA CSLPKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-441414710140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7753121e-153KC775312.1 Jatropha curcas NAC transcription factor 034 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012065446.11e-115NAC domain-containing protein 35
SwissprotQ10S652e-70NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBLR4NHM31e-113R4NHM3_JATCU; NAC transcription factor 034
STRINGcassava4.1_015927m7e-89(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62143251
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.12e-75NAC domain containing protein 36
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  2. Wu Z, et al.
    Genome-Wide Analysis of the NAC Gene Family in Physic Nut (Jatropha curcas L.).
    PLoS ONE, 2015. 10(6): p. e0131890
    [PMID:26125188]
  3. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]