PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01222.10
Common NameJCGZ_19927, LOC105644191
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family NAC
Protein Properties Length: 190aa    MW: 22282.2 Da    PI: 5.6933
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01222.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM91.21.8e-2861251128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvka.eekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevl 93 
                    lp G+rF+Ptd+el+ +yLk+k+ gk+l++ ++i+++d+++++P +Lp +++++   +e yfFs+r+k         r  t++g+ + + ++ +++
  Jcr4S01222.10   6 LPSGYRFRPTDSELILYYLKNKILGKELPV-NIIPTIDVFSCNPDQLPlSEFTHgMPNERYFFSNRRK--------GRiLTEDGFYHVS-STGSIY 91 
                    699***************************.89***************655444145599***99854........565899***9966.5689** PP

            NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                    + k++lvg  +tL fy+gr +kg k++W++he+r+
  Jcr4S01222.10  92 D-KNKLVGFVRTLDFYHGRPNKGIKSKWTVHEFRV 125
                    9.899****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.59E-322149IPR003441NAC domain
PROSITE profilePS5100531.8586151IPR003441NAC domain
PfamPF023659.8E-177125IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MEQLVLPSGY RFRPTDSELI LYYLKNKILG KELPVNIIPT IDVFSCNPDQ LPLSEFTHGM  60
PNERYFFSNR RKGRILTEDG FYHVSSTGSI YDKNKLVGFV RTLDFYHGRP NKGIKSKWTV  120
HEFRVNPQVF QEDEDAQENI LNSVACKIIH KLETSTSQIK EKIKIIDLEF EDEEESEMEN  180
VLSRDNKFRE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-18312512140Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7753311e-141KC775331.1 Jatropha curcas NAC transcription factor 053 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012084854.11e-139NAC domain-containing protein 41
TrEMBLR4NFY81e-138R4NFY8_JATCU; NAC transcription factor 053
STRINGXP_002526101.16e-52(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14452718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-28NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  2. Wu Z, et al.
    Genome-Wide Analysis of the NAC Gene Family in Physic Nut (Jatropha curcas L.).
    PLoS ONE, 2015. 10(6): p. e0131890
    [PMID:26125188]