PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01242.30
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family LBD
Protein Properties Length: 227aa    MW: 25146.6 Da    PI: 6.7559
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01242.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.31.4e-3971071100
         DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                    +C aCk+lrrkC+++Cv+apyf+ eq + +fa+vhk+FGasnv+kll +lp ++r+da+ ++ yeA ar+rdP+yG+v++i++lqqq+++l++e++
  Jcr4S01242.30   7 SCGACKFLRRKCTSECVFAPYFCYEQaATHFAAVHKVFGASNVSKLLLHLPLQNRSDAAITISYEALARMRDPIYGCVAHIFALQQQIASLQEEIE 102
                    6***********************99789******************************************************************* PP

         DUF260  96 llkee 100
                     l+++
  Jcr4S01242.30 103 ILGHQ 107
                    99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.5456108IPR004883Lateral organ boundaries, LOB
PfamPF031958.1E-377104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MTGLGSSCGA CKFLRRKCTS ECVFAPYFCY EQAATHFAAV HKVFGASNVS KLLLHLPLQN  60
RSDAAITISY EALARMRDPI YGCVAHIFAL QQQIASLQEE IEILGHQMAN LTVGIASRGS  120
SQTISNPNCS SLQDAINMQY FQNQPAAQVN NAGYATGNQA FDSQMNVQLP GYEWEDQNLF  180
CDSHPNSLER LLEVVDQEFS PILRVVGQWE QCKLKLKIGT KKSIFSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-3431027105LOB family transfactor Ramosa2.1
5ly0_B3e-3431027105LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012091407.11e-149LOB domain-containing protein 33
TrEMBLA0A067LJS21e-148A0A067LJS2_JATCU; Uncharacterized protein
STRINGcassava4.1_027792m1e-125(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91963242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.13e-61LOB domain-containing protein 33