PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S01270.90

Common Name

JCGZ_11766, LOC105640671

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

Dof

Protein Properties

Length: 334aa MW: 36528.8 Da PI: 7.3421

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S01270.90	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.2	8.7e-39	30	89	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++alkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvP+Ggg+rk k+s Jcr4S01270.90 30 NHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPIGGGCRKTKRS 89 57899****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-28	28	88	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.1E-33	32	88	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.571	34	88	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	36	72	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MQDIHSIGGG GRLFGGGGGD RRLRPHHHQN HQALKCPRCD SLNTKFCYYN NYNLSQPRHF 60 CKNCRRYWTK GGVLRNVPIG GGCRKTKRSK PKQNNSTTDN NTTSTTTATT TTNTTPPQPQ 120 QPQQQEQQRE RKSSNSHSSS ESSSLTATNT TTANTGLEAV SAHSSSSASN TILNGIGESK 180 LFAHGNINPS FEPGLLEQGS DCGIFSEIGS FTSLITSTNE PLSFGFSNII SQQSLEHAQQ 240 NQNEQWQQQS QPKMVSIGGE EMKMQEMAGG LIDQTVHVEL SALPSSRSGN GGFGQLDWQS 300 TGDQGLFDLS NTVDQAYWSQ SQWTDQDHPS LYLP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	9	17	GGRLFGGGG

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00570	DAP	Transfer from AT5G60850	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012080436.1	0.0	dof zinc finger protein DOF5.4
TrEMBL	A0A067KGJ9	0.0	A0A067KGJ9_JATCU; Uncharacterized protein
STRING	cassava4.1_011611m	1e-154	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5998	30	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	2e-38	OBF binding protein 4

Link Out ? help Back to Top
Entrez Gene	105640671

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]