PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01276.110
Common NameJCGZ_26299
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 274aa    MW: 30341 Da    PI: 9.3561
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01276.110genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.35.9e-21119169255
             AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrdp   + k +r++lg+f+ta eAaka+++a+ +l+g
  Jcr4S01276.110 119 HYRGVRRRP-WGKYAAEIRDP---NkKGARVWLGTFDTAIEAAKAYDNAAFRLRG 169
                     8********.**********9...4345*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.4E-32118178IPR001471AP2/ERF domain
CDDcd000182.52E-32118177No hitNo description
SuperFamilySSF541715.82E-23119179IPR016177DNA-binding domain
SMARTSM003801.8E-37119183IPR001471AP2/ERF domain
PROSITE profilePS5103224.526119177IPR001471AP2/ERF domain
PfamPF008471.8E-14119169IPR001471AP2/ERF domain
PRINTSPR003672.0E-10120131IPR001471AP2/ERF domain
PRINTSPR003672.0E-10143159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MASPNEASAL DQIRQHLLST DCASFDSFIS TSNNFFLKSE IQDFDYLLPN QTLNLEFKSQ  60
QVVQNSNNSP KSSTLSQRKP AMSKISIPPP ATMNVMPVPV VAVAAENNRS SDHSSEEKHY  120
RGVRRRPWGK YAAEIRDPNK KGARVWLGTF DTAIEAAKAY DNAAFRLRGS KAILNFPLEV  180
GNCNSNPQRE SQLTENNNNN NKKRKIEDAK SEGSNDNIKM VKRENPSPAA ATDPLTPSSW  240
KGFWDGEVTG IFSVPPLSPL SPHPTMGYSQ LMVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-31118180163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00556DAPTransfer from AT5G51190Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0220080.0KF022008.1 Jatropha curcas ethylene responsive element binding factor (ERF5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001295611.10.0ethylene-responsive transcription factor ERF105-like
TrEMBLA0A067JI280.0A0A067JI28_JATCU; Uncharacterized protein
STRINGcassava4.1_013315m3e-96(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.11e-57ERF family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]