PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S01276.120

Common Name

JCGZ_26298, LOC105648652

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

ERF

Protein Properties

Length: 223aa MW: 24760.4 Da PI: 6.3668

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S01276.120	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	58.1	2.1e-18	105	155	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdps k r++lg+f+t +Aaka++ a+ +++g Jcr4S01276.120 105 HYRGVRRRP-WGKFAAEIRDPSR--KGSRVWLGTFDTDIDAAKAYDCAAFRMRG 155 8******.******854..34***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	2.57E-28	104	163	No hit	No description
Gene3D	G3DSA:3.30.730.10	1.1E-31	104	164	IPR001471	AP2/ERF domain
SMART	SM00380	5.4E-35	105	169	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.27E-22	105	164	IPR016177	DNA-binding domain
Pfam	PF00847	1.9E-13	105	155	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	24.342	105	163	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.0E-13	106	117	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.0E-13	145	165	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MATPQESSAL ELIRQHLLGD FTSTDVFISN LDSHISSLVH NLQPVKLETQ DESLSGSESN 60 SSVSDSFQYT HEFVDLKSQE YSGSGSVKRS STPKAKPADD DEKKHYRGVR RRPWGKFAAE 120 IRDPSRKGSR VWLGTFDTDI DAAKAYDCAA FRMRGRKAIL NFPLEAGRAD PPANTGRKRR 180 RVKREDVPPE SGDLSPVSWD SGCVGGEGEG VFFYEEQPSP LFC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	4e-29	104	164	4	64	ATERF1
3gcc_A	4e-29	104	164	4	64	ATERF1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	176	180	RKRRR
2	176	183	RKRRRVKR
3	177	181	KRRRV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012090504.1	1e-165	ethylene-responsive transcription factor ERF106
TrEMBL	A0A067JF46	1e-164	A0A067JF46_JATCU; Uncharacterized protein
STRING	cassava4.1_015180m	2e-91	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5257	30	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G07580.1	6e-47	ERF family protein

Link Out ? help Back to Top
Entrez Gene	105648652

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]