PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S01285.40

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

ERF

Protein Properties

Length: 185aa MW: 20827.3 Da PI: 5.4313

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S01285.40	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	65.1	1.4e-20	86	135	2	55
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrd + r r++lg+f taeeAa+a++ a+ k++g Jcr4S01285.40 86 KYRGVRQRP-WGKWAAEIRDpW-----RaIRVWLGTFSTAEEAARAYDTAAIKFRG 135 8******.******88.....77***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	8.1E-13	86	135	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	7.5E-33	86	144	IPR001471	AP2/ERF domain
SMART	SM00380	1.9E-39	86	149	IPR001471	AP2/ERF domain
CDD	cd00018	2.20E-35	86	145	No hit	No description
SuperFamily	SSF54171	1.96E-23	86	145	IPR016177	DNA-binding domain
PROSITE profile	PS51032	24.961	86	143	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.1E-12	87	98	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.1E-12	109	125	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MNITTNINRL TSEEEDSIMV AALKQVISGD TSSIAPPNII HILQGSDKCP VCNMDSVDCL 60 GCNFFGSNQE EKDDSNKERM NKKKNKYRGV RQRPWGKWAA EIRDPWRAIR VWLGTFSTAE 120 EAARAYDTAA IKFRGNKAKT NFPLSDYAQT SKNNEKMEKY KNAGESSSKV VAEEDDSIDS 180 MMIED

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	1e-22	83	144	2	64	ATERF1
3gcc_A	1e-22	83	144	2	64	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012079573.1	1e-137	ethylene-responsive transcription factor ERF109
Swissprot	Q9SZ06	5e-30	EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBL	A0A067KI25	1e-122	A0A067KI25_JATCU; Uncharacterized protein
STRING	cassava4.1_029125m	2e-70	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2962	30	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34410.1	2e-29	redox responsive transcription factor 1

Publications ? help Back to Top
Matsuo M,Oelmüller R REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling. Plant Signal Behav, 2015. 10(11): p. e1051279 [PMID:26479402] Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression. J Vis Exp, 2018. [PMID:26649488] Bahieldin A, et al. Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant. BMC Plant Biol., 2016. 16(1): p. 216 [PMID:27716054] Huang D,Lin W,Deng B,Ren Y,Miao Y Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis. Int J Mol Sci, 2018. [PMID:29112140] Kong X, et al. PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis. Cell Rep, 2018. 22(5): p. 1350-1363 [PMID:29386120]