PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S01288.10

Common Name

JCGZ_16107, LOC105630924

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

C2H2

Protein Properties

Length: 425aa MW: 48919.4 Da PI: 7.7458

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S01288.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.6	9.7e-05	171	194	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 + C+ Cg+ ++++++Lk+H + H Jcr4S01288.10 171 HICGVCGRKCKTSMDLKKHFKQlH 194 68*****************98766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.50.1010	2.3E-5	94	144	IPR029060	PIN domain-like
PROSITE profile	PS50157	9.972	171	199	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	173	194	IPR007087	Zinc finger, C2H2
CDD	cd06167	9.27E-13	185	325	No hit	No description
Gene3D	G3DSA:3.40.50.1010	2.3E-5	246	321	IPR029060	PIN domain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence Send to blast
MVTLSNPIEI YPLLKPPLLL HKTTTLHFSQ FLSNTTSLKN KLAFTYKPLT IDPIRTDRYL 60 ITASVANHTV SSASTSEIDM VKNRQGVYTS KRPKVVVLWD LDNKPPRGPP YPAAMALKQL 120 AQRFGEIIEM SAYANRHAFI HLPHWVVEER RRKKQFDILE RKGLIASSET HICGVCGRKC 180 KTSMDLKKHF KQLHERERQK KLNRMKSLKG KKRQRFKERF ISGNHKYNDE ARRLLTPKVG 240 YGLAEELRRA GVYVKTVEDK PQAADWAVKR QIQHSMSRGV DWLFLISDDS DFSDILRRAR 300 EANLRTVVVG DRGRALGRHA DLWVPWIGVE NGEVTENDLV PKSRSSEYFE ENSGSYSVSD 360 FDGDIGVESD TYDVLNDLAR AASEWNGARI SVFSEGEEEE EDQDYMLWDS EDEEIEEENG 420 DFLVW

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence Send to blast

MVTLSNPIEI YPLLKPPLLL HKTTTLHFSQ FLSNTTSLKN KLAFTYKPLT IDPIRTDRYL  60
ITASVANHTV SSASTSEIDM VKNRQGVYTS KRPKVVVLWD LDNKPPRGPP YPAAMALKQL  120
AQRFGEIIEM SAYANRHAFI HLPHWVVEER RRKKQFDILE RKGLIASSET HICGVCGRKC  180
KTSMDLKKHF KQLHERERQK KLNRMKSLKG KKRQRFKERF ISGNHKYNDE ARRLLTPKVG  240
YGLAEELRRA GVYVKTVEDK PQAADWAVKR QIQHSMSRGV DWLFLISDDS DFSDILRRAR  300
EANLRTVVVG DRGRALGRHA DLWVPWIGVE NGEVTENDLV PKSRSSEYFE ENSGSYSVSD  360
FDGDIGVESD TYDVLNDLAR AASEWNGARI SVFSEGEEEE EDQDYMLWDS EDEEIEEENG  420
DFLVW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012068306.1	0.0	uncharacterized protein LOC105630924
Refseq	XP_012068307.1	0.0	uncharacterized protein LOC105630924
Refseq	XP_012068308.1	0.0	uncharacterized protein LOC105630924
Refseq	XP_020533691.1	0.0	uncharacterized protein LOC105630924
TrEMBL	A0A067LB48	0.0	A0A067LB48_JATCU; Uncharacterized protein
STRING	POPTR_0014s02520.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6441	31	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52010.1	1e-150	C2H2-like zinc finger protein

Link Out ? help Back to Top
Entrez Gene	105630924

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]