PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S01288.50

Common Name

JCGZ_16111, LOC105630928

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

NAC

Protein Properties

Length: 155aa MW: 17930.2 Da PI: 9.6974

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S01288.50	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	93.5	3.5e-29	6	148	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk........leleevikevdiykvePwdLp.k.....kvkaeekewyfFskrdkkya.tgkrknratksgy 82 ppG+rF P+de+l+++yL++k ++++ ++ + ike+d+y++eP dLp + + +++++wy ++k + ++ +g r++ra k gy Jcr4S01288.50 6 PPGCRFYPSDEQLLCFYLTNKNNTNRdaddvnsnTNGYDLIKELDLYDYEPFDLPdNscyayGCGGRKRHWYCYAKLRVLNEsRGGRSRRA-KGGY 100 8******************9999977666544333458**********954666553344778999876655167788886.88 PP NAM 83 Wkatgkdkevlsk.kgelvglkktLvfykg.rapkgektdWvmheyrl 128 W+++g+ ++v +++++g ++ +vfy g + +++ +tdW++ ey+l Jcr4S01288.50 101 WRKSGRVRDVAGPgGKAVIGRRTRFVFYLGnSVKSAIRTDWILYEYAL 148 *********99666779*****883556678*******87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.09E-31	3	151	IPR003441	NAC domain
PROSITE profile	PS51005	32.344	5	155	IPR003441	NAC domain
Pfam	PF02365	2.0E-17	6	148	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence Send to blast
MSFSRPPGCR FYPSDEQLLC FYLTNKNNTN RDADDVNSNT NGYDLIKELD LYDYEPFDLP 60 DNSCYAYGCG GRKRHWYCYA KLRVLNESRG GRSRRAKGGY WRKSGRVRDV AGPGGKAVIG 120 RRTRFVFYLG NSVKSAIRTD WILYEYALID RGKVF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-18	2	150	14	144	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-18	2	150	14	144	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-18	2	150	14	144	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-18	2	150	14	144	NO APICAL MERISTEM PROTEIN
3swm_A	2e-18	2	150	17	147	NAC domain-containing protein 19
3swm_B	2e-18	2	150	17	147	NAC domain-containing protein 19
3swm_C	2e-18	2	150	17	147	NAC domain-containing protein 19
3swm_D	2e-18	2	150	17	147	NAC domain-containing protein 19
3swp_A	2e-18	2	150	17	147	NAC domain-containing protein 19
3swp_B	2e-18	2	150	17	147	NAC domain-containing protein 19
3swp_C	2e-18	2	150	17	147	NAC domain-containing protein 19
3swp_D	2e-18	2	150	17	147	NAC domain-containing protein 19
4dul_A	1e-18	2	150	14	144	NAC domain-containing protein 19
4dul_B	1e-18	2	150	14	144	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC775339	0.0	KC775339.1 Jatropha curcas NAC transcription factor 061 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012068313.1	1e-110	NAC domain-containing protein 83
TrEMBL	R4N5R6	1e-109	R4N5R6_JATCU; NAC transcription factor 061
STRING	Lus10010037	1e-71	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13001	26	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	3e-18	NAC family protein

Link Out ? help Back to Top
Entrez Gene	105630928

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971] Wu Z, et al. Genome-Wide Analysis of the NAC Gene Family in Physic Nut (Jatropha curcas L.). PLoS ONE, 2015. 10(6): p. e0131890 [PMID:26125188]