PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01293.40
Common NameWRKY57
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family WRKY
Protein Properties Length: 238aa    MW: 27028.9 Da    PI: 4.2125
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01293.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY39.89.3e-13951362159
                    -EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY  21 prsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      sY+rCt++   gC+++k+v++ +edpk+  +tY g+H+++
  Jcr4S01293.40  95 GESYFRCTHKydqGCKATKQVQKMEEDPKMYRTTYIGQHTCR 136
                    579******99999*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007742.1E-1086137IPR003657WRKY domain
SuperFamilySSF1182901.44E-1195136IPR003657WRKY domain
PfamPF031068.8E-1396136IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-1396136IPR003657WRKY domain
PROSITE profilePS5081111.11897133IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MGTSLPENVP STNREKVGEE LLHGQEFATQ LQFLLKGPCG DLLLADELVV KILRSFNEAL  60
SLLSSCEFLE NSQNLITTSQ VDSVCCDDRR SEDSGESYFR CTHKYDQGCK ATKQVQKMEE  120
DPKMYRTTYI GQHTCRDILK VPQIITSTTQ DSYPWESYML SSDSKIPITP TYNATTIKQE  180
YKEATTPSDL TDNLPSSDTG MWWKGFESTA SQSLDMDFVD FDSDFHFDET EFNYLSAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-14961362969OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4853090.0KC485309.1 Jatropha curcas WRKY transcription factor (WRKY57) gene, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012091128.11e-169probable WRKY transcription factor 70 isoform X2
TrEMBLS5CFW31e-168S5CFW3_JATCU; WRKY transcription factor 57.1
STRINGcassava4.1_012154m1e-79(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47003056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.15e-26WRKY DNA-binding protein 70
Publications ? help Back to Top
  1. Xiong W, et al.
    Genome-wide analysis of the WRKY gene family in physic nut (Jatropha curcas L.).
    Gene, 2013. 524(2): p. 124-32
    [PMID:23644253]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]