PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S01308.20

Common Name

JCGZ_09056, LOC105636282

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

Dof

Protein Properties

Length: 362aa MW: 37605.9 Da PI: 9.0552

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S01308.20	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.5	7.2e-39	84	143	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+alkcprC+stntkfCy+nnysl+qPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+s+ Jcr4S01308.20 84 ETALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSK 143 7789*****************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-34	67	136	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.9E-32	86	141	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.544	87	141	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	89	125	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MVFSSIPAYL DPANWQQIFV LLSILQQPNN HHQPGGTSGA NTHQLPPPPP PPPLPQPHGS 60 GGAGSIRPGS MADRARLANI PMPETALKCP RCESTNTKFC YFNNYSLTQP RHFCKTCRRY 120 WTRGGALRNV PVGGGCRRNK RSKGSNSKSP VSGDRPTGSG SSSTVSSNSG TSDMLGLVPQ 180 VPPLRFMAPL HHLSEFATGD IGLNYGALSG QVGGPSDLNF QIGSALASVG LGGSGGGCGS 240 GSGSGVGGSL LSVGGLEQWR LHQGPQFPFL GGLDSSSSNS GLYPFESSGG GEPSGYGGGV 300 GQVRPKISSS LTTQFASVKM EDNPELNLSR QLLGMTGNDH YWTGTAWTDL SSFSSSSTSN 360 PL

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MVFSSIPAYL DPANWQQIFV LLSILQQPNN HHQPGGTSGA NTHQLPPPPP PPPLPQPHGS  60
GGAGSIRPGS MADRARLANI PMPETALKCP RCESTNTKFC YFNNYSLTQP RHFCKTCRRY  120
WTRGGALRNV PVGGGCRRNK RSKGSNSKSP VSGDRPTGSG SSSTVSSNSG TSDMLGLVPQ  180
VPPLRFMAPL HHLSEFATGD IGLNYGALSG QVGGPSDLNF QIGSALASVG LGGSGGGCGS  240
GSGSGVGGSL LSVGGLEQWR LHQGPQFPFL GGLDSSSSNS GLYPFESSGG GEPSGYGGGV  300
GQVRPKISSS LTTQFASVKM EDNPELNLSR QLLGMTGNDH YWTGTAWTDL SSFSSSSTSN  360
PL

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00295	DAP	Transfer from AT2G37590	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012074916.1	0.0	dof zinc finger protein DOF2.4 isoform X1
TrEMBL	A0A067KKT8	0.0	A0A067KKT8_JATCU; Uncharacterized protein
STRING	EOY07547	1e-150	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF656	34	143

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37590.1	1e-47	DNA binding with one finger 2.4

Link Out ? help Back to Top
Entrez Gene	105636282

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]