PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S01324.10

Common Name

JCGZ_21433, LOC105649534

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

HSF

Protein Properties

Length: 214aa MW: 24779 Da PI: 9.3497

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S01324.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	103.6	1.7e-32	37	141	2	102
HHHHHHHHHCTG.............GGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEES CS HSF_DNA-bind 2 Flkklyeilede.............elkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhk 84 Fl+k+y++le++ + k+++sw+++g+ f+v+ + ef++ Lp+yFkh+nf+SF+RQLn+YgFkk++++ weFkh+ Jcr4S01324.10 37 FLSKTYDLLEENgelgssapdfgsnDGKKIVSWNDEGTGFIVWSPAEFSEFTLPRYFKHNNFSSFIRQLNTYGFKKTSSKL---------WEFKHE 123 9*******55555556666665599*********************************************99876.........** PP XXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 85 sFkkgkkellekikrkks 102 +F++g++++l +i rkk Jcr4S01324.10 124 KFQRGSRHMLVEITRKKC 141 *************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	2.9E-35	27	134	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.6E-38	33	139	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	5.85E-25	35	139	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	8.7E-29	37	139	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.5E-9	88	100	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.5E-9	101	113	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MAKNLSELNR SIISRRSSAS SSSSGQQSPR TKTPAPFLSK TYDLLEENGE LGSSAPDFGS 60 NDGKKIVSWN DEGTGFIVWS PAEFSEFTLP RYFKHNNFSS FIRQLNTYGF KKTSSKLWEF 120 KHEKFQRGSR HMLVEITRKK CEPSVFPPYL KACHEENTMD ENDRLILLEQ NNNLKRENLE 180 LQMELAQFKA LELKLLDYLA QYMGSHHNKI RRLC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5w_B	1e-14	35	139	2	104	Putative transcription factor
5d5x_B	1e-14	35	139	2	104	Putative transcription factor
5d5x_E	1e-14	35	139	2	104	Putative transcription factor
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012091595.1	1e-159	heat stress transcription factor B-2a
TrEMBL	A0A067JB20	1e-158	A0A067JB20_JATCU; Uncharacterized protein
STRING	cassava4.1_029573m	1e-115	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11357	28	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62020.1	2e-38	heat shock transcription factor B2A

Link Out ? help Back to Top
Entrez Gene	105649534

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]