PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01359.40
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family TALE
Protein Properties Length: 180aa    MW: 20861.6 Da    PI: 9.3043
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01359.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox31.53.1e-101071422055
                    HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
       Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                    +k +yps++e+  LA+++gL+++q+ +WF N+R ++
  Jcr4S01359.40 107 YKWPYPSETEKVALAESTGLDQKQINNWFINQRKRH 142
                    5679*****************************885 PP
2ELK39.21.5e-136283122
            ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                   ELK++LlrKYsgyL+sLkqE+s
  Jcr4S01359.40 62 ELKNHLLRKYSGYLSSLKQELS 83
                   9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5121311.2966282IPR005539ELK domain
PfamPF037891.0E-106283IPR005539ELK domain
SMARTSM011883.5E-76283IPR005539ELK domain
PROSITE profilePS5007113.00582145IPR001356Homeobox domain
SuperFamilySSF466891.63E-2083157IPR009057Homeodomain-like
SMARTSM003898.8E-1384149IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.6E-2887148IPR009057Homeodomain-like
CDDcd000869.35E-1394146No hitNo description
PfamPF059204.6E-17102141IPR008422Homeobox KN domain
PROSITE patternPS000270120143IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MYGSNFSKKF YVGGIQPYGY RIAVKKGIDE KSEGVGSSEE DQDNSGGETE LPEIDPRAED  60
RELKNHLLRK YSGYLSSLKQ ELSKKKKKGK LPKEARQKLL SWWELHYKWP YPSETEKVAL  120
AESTGLDQKQ INNWFINQRK RHWKPSEDMQ FMVMDGLHPQ NAALYMDGHY MGDGPYRLGP
Functional Description ? help Back to Top
Source Description
UniProtProbably binds to the DNA sequence 5'-TGAC-3'.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012068139.11e-108homeobox protein knotted-1-like 2
RefseqXP_015572849.11e-108homeotic protein knotted-1
SwissprotO041359e-94KNAP2_MALDO; Homeobox protein knotted-1-like 2
TrEMBLA0A067KZF31e-107A0A067KZF3_JATCU; Uncharacterized protein
TrEMBLB9R6T41e-108B9R6T4_RICCO; Homeobox protein knotted-1, putative
STRINGEOY156241e-107(Theobroma cacao)
STRINGXP_002510027.11e-109(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45843246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.13e-84KNOTTED-like from Arabidopsis thaliana