PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S01363.30

Common Name

JCGZ_18327, LOC105642028

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

LBD

Protein Properties

Length: 243aa MW: 26825.3 Da PI: 6.2671

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S01363.30	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	96.5	2.8e-30	4	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +C++C+vlr++C++dC+++p++ p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +PvyG+vg+++++++ +q++ Jcr4S01363.30 4 SCNGCRVLRKGCSDDCTIRPCLqwiksPDSQANATLFLAKFYGRAGLINLIDAGPQHLRPAVFRSLLYEACGRIVNPVYGSVGLLWSGNWAQCQAA 99 6*********************************************************************************************** PP DUF260 92 aelallke 99 ++++l+++ Jcr4S01363.30 100 VDAVLRGT 107 99988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.181	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.5E-24	4	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSDDCT IRPCLQWIKS PDSQANATLF LAKFYGRAGL INLIDAGPQH 60 LRPAVFRSLL YEACGRIVNP VYGSVGLLWS GNWAQCQAAV DAVLRGTPIM QMPSAPDAPP 120 PHLIDPFKTY DIRHVSKDSS SVELNKVKNR TRFKRPINKP TSPSESIGRV NLGDLSFEQF 180 REPWSSQMAN GDSSKDDESM FSIETVEDVN RDREPNQNLN NSGSDDGDEV AGLELTLGLV 240 PVQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012082091.1	0.0	LOB domain-containing protein 42
Swissprot	Q9CA30	2e-84	LBD42_ARATH; LOB domain-containing protein 42
TrEMBL	A0A067JZK2	1e-180	A0A067JZK2_JATCU; Uncharacterized protein
STRING	cassava4.1_014940m	1e-145	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1546	34	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68510.1	7e-87	LOB domain-containing protein 42

Link Out ? help Back to Top
Entrez Gene	105642028

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]