PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01386.20
Common NameJCGZ_07907, LOC105650469
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family bHLH
Protein Properties Length: 399aa    MW: 44586.4 Da    PI: 7.6587
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01386.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.41.1e-12333378655
                    HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +++Er RR ri +++ +L++l+P+     +k  + a++L +Av+YIk+Lq
  Jcr4S01386.20 333 SIAERVRRTRISERMRKLQDLVPNM----DKQTNTADMLDLAVDYIKDLQ 378
                    689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.275327377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-16330390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.77E-12331382No hitNo description
Gene3DG3DSA:4.10.280.101.4E-15332390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-14333383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-9333378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0042335Biological Processcuticle development
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MESEFQHHHP FIQDYHQQQQ HHQKQMNSGL TRYQSAPSSY FSGFLDRDFC DEFLNRPSSP  60
ETERIFARLL ASTGGNTENV PSQNFSALKP DSPVKEEVPQ VNQQPQINDT RLQRQSSNYS  120
ASQSFYQSQS KPPLPDHNSG SAMDYRMVTP MGMERLPQMK SSSSGNNSNL VRHSSSPAGL  180
FSDINIEMEN GYAVLRGMAD YGTANRETSY SAASRPPAAP PSGRMSLIAE IGNKENSSDN  240
YAAASFSIAS WDDASVMSSG AKRLTDDDRT PSGLNTSETQ NAEAVTRPPL LAHHLSLPKT  300
SAEFSAIEKY LQLQDSVPCK IRAKRGCATH PRSIAERVRR TRISERMRKL QDLVPNMDKQ  360
TNTADMLDLA VDYIKDLQRQ VKTLSENRDK CTCTSKHQQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00195DAPTransfer from AT1G51140Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012092767.10.0transcription factor bHLH122 isoform X1
TrEMBLA0A067J8U90.0A0A067J8U9_JATCU; Uncharacterized protein
STRINGcassava4.1_008682m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41853455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51140.13e-83bHLH family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]