PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S01394.20

Common Name

JCGZ_06550, LOC105629389

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

NAC

Protein Properties

Length: 237aa MW: 28062.5 Da PI: 5.2201

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S01394.20	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	89.9	4.5e-28	7	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lp+G+rF+Ptd+e++ +yL +k++g +++ + ik++d+y+ + +++ k + +++ek+ yfF+k +kk+ +g r +r+t g+Wk+t k+k++ Jcr4S01394.20 7 LPVGYRFRPTDNEIILYYLFNKASGVSIPS-NPIKDFDLYDDNDQTMMKvfQDTSQEKNFYFFTKLKKKHGKGMRIQRITGLGTWKETQKEKNISW 101 799************************9.88**********8523334467788******************************99 PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +g+k+ + f ++ + +++W+m+e+rl Jcr4S01394.20 102 -ENQIIGTKRGFKFVPKKGFE-LNSRWLMDEFRL 133 .999*******655555.79******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-33	3	155	IPR003441	NAC domain
PROSITE profile	PS51005	32.218	7	155	IPR003441	NAC domain
Pfam	PF02365	1.1E-16	8	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MENSHNLPVG YRFRPTDNEI ILYYLFNKAS GVSIPSNPIK DFDLYDDNDQ TMMKVFQDTS 60 QEKNFYFFTK LKKKHGKGMR IQRITGLGTW KETQKEKNIS WENQIIGTKR GFKFVPKKGF 120 ELNSRWLMDE FRLHSSLLNQ TNQFDEYVVC HIKNEKELRS KSHFYEEDNK VTQEQEASLQ 180 SDSGTFNLKL HQHGSELMDT ISDNLWTTQE VLEPLQLDMI SDNDWITEEE LEKLLLD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-21	6	152	16	162	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-21	6	152	16	162	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-21	6	152	16	162	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-21	6	152	16	162	NO APICAL MERISTEM PROTEIN
3swm_A	3e-21	6	152	19	165	NAC domain-containing protein 19
3swm_B	3e-21	6	152	19	165	NAC domain-containing protein 19
3swm_C	3e-21	6	152	19	165	NAC domain-containing protein 19
3swm_D	3e-21	6	152	19	165	NAC domain-containing protein 19
3swp_A	3e-21	6	152	19	165	NAC domain-containing protein 19
3swp_B	3e-21	6	152	19	165	NAC domain-containing protein 19
3swp_C	3e-21	6	152	19	165	NAC domain-containing protein 19
3swp_D	3e-21	6	152	19	165	NAC domain-containing protein 19
4dul_A	2e-21	6	152	16	162	NAC domain-containing protein 19
4dul_B	2e-21	6	152	16	162	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC775356	0.0	KC775356.1 Jatropha curcas NAC transcription factor 078 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012066376.1	1e-176	NAC domain-containing protein 19
TrEMBL	R4NG05	1e-175	R4NG05_JATCU; NAC transcription factor 078

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF17637	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08790.1	3e-24	NAC family protein

Link Out ? help Back to Top
Entrez Gene	105629389

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971] Wu Z, et al. Genome-Wide Analysis of the NAC Gene Family in Physic Nut (Jatropha curcas L.). PLoS ONE, 2015. 10(6): p. e0131890 [PMID:26125188]