PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S01444.90

Common Name

JCGZ_25006

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

G2-like

Protein Properties

Length: 260aa MW: 30034.9 Da PI: 8.0685

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S01444.90	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	94.7	7.3e-30	11	65	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+ LH+rF av+qLGG+++AtPk il++m+ +gLt++hvkSHLQkYR+ Jcr4S01444.90 11 KERLRWTQPLHDRFEMAVNQLGGPDRATPKGILKAMSTPGLTIYHVKSHLQKYRI 65 68****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.9E-28	9	66	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.48E-16	10	65	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.5E-23	11	66	IPR006447	Myb domain, plants
Pfam	PF00249	1.5E-6	13	64	IPR001005	SANT/Myb domain
Pfam	PF14379	9.9E-19	97	139	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MASSRADASG KERLRWTQPL HDRFEMAVNQ LGGPDRATPK GILKAMSTPG LTIYHVKSHL 60 QKYRISKFIP ESNNKGKLER RNISELLPNF GTTSAAQLNE ALQMQMEVQR RLSDQLEVQK 120 NLKAKIEAQG RFLDRIVVEH RNRPMNVRKH NKSSFSTSLP SLCDESESNY SKEFESYTEN 180 IDRVENEIQC EQDDEFQALK RLRTENDVLP LRYKLEQLNS DPYSNLQNMI YERDDAKFSN 240 NIDLPWSSPS CSLPLLPSFL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-21	10	68	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-21	10	68	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-21	10	68	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-21	10	68	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-21	10	68	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-21	10	68	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-21	10	68	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-21	10	68	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012088020.2	0.0	myb family transcription factor PHL7
Swissprot	Q9SJW0	5e-48	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A067JKM4	0.0	A0A067JKM4_JATCU; Uncharacterized protein
STRING	cassava4.1_033004m	1e-122	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10659	25	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	3e-50	G2-like family protein

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]