PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01477.60
Common NameLOC105633748
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family NAC
Protein Properties Length: 363aa    MW: 39939.1 Da    PI: 4.3575
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01477.60genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM45.91.9e-14181199128
            NAM   9 PtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkk 104
                     tdeel    L+k ++g + +  +vi++v+ y++eP++Lp      +  wyf  +++++          ++ g+W+ +g+  +++s +++ +g ++
  Jcr4S01477.60  18 CTDEELF-ISLEKMADGYPPPG-NVITDVNPYNYEPSNLP------DGIWYFI-PSKEN--------GPIELGFWRVKGEACKLFS-SSAITGWRT 95 
                    599***9.56999999999998.99**************9......2346655.54443........34789**************.9999***** PP

            NAM 105 tLvfykgrapkgektdWvmheyrl 128
                    tL f++g+ p+ +ktdW+m++y +
  Jcr4S01477.60  96 TLEFFEGQVPHEQKTDWIMQDYWI 119
                    **********************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100522.27910142IPR003441NAC domain
PfamPF023651.8E-617117IPR003441NAC domain
SuperFamilySSF1019412.75E-2119141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MRPPTSPIAS LPDIALDCTD EELFISLEKM ADGYPPPGNV ITDVNPYNYE PSNLPDGIWY  60
FIPSKENGPI ELGFWRVKGE ACKLFSSSAI TGWRTTLEFF EGQVPHEQKT DWIMQDYWIT  120
RKGPDENSKV KEGSSLCKVF HGGEQGLDHN NRQKMASLHV PHDSTQSIVL KTLNDTSKPV  180
ANKDGETGNL AVTGEPPSAL VEMENPAEID YFSRGDYLEL RDLDTPASRS STSDNSSCFT  240
MSSDECFDSL ALLEEIEAKI NQDSVQKNES CKLSISAPSK PDEVVWAPAS PGSLIGIEES  300
KPHTGEILAT ESSPPTLAND HKDQDNIVLQ HSIRNQKANY SDEGSSSSND VGTSSDHRLP  360
FSR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7753750.0KC775375.1 Jatropha curcas NAC transcription factor 097 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012071783.10.0NAC transcription factor 29 isoform X2
TrEMBLR4N7U00.0R4N7U0_JATCU; NAC transcription factor 097
STRINGcassava4.1_009209m1e-150(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105882235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-17NAC domain containing protein 28
Publications ? help Back to Top
  1. Wu Z, et al.
    Genome-Wide Analysis of the NAC Gene Family in Physic Nut (Jatropha curcas L.).
    PLoS ONE, 2015. 10(6): p. e0131890
    [PMID:26125188]