PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01481.40
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family B3
Protein Properties Length: 239aa    MW: 26959.9 Da    PI: 9.7658
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01481.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.87.9e-13106194181
                    EEEE-..-HHHHT.T-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
             B3   1 ffkvltpsdvlks.grlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                    f+k+lt+sdv +  +rl+l k ++e+         +g+   ++++t++d++g+++ ++l+++ ++  yvl +GWkeF + ++L+e++ +v
  Jcr4S01481.40 106 FEKQLTSSDVRSDqSRLTLNKAYVERSilpllnreEGNLDDGIKVTIYDPEGNEYPMTLKMWASK-VYVLMGGWKEFYQKQKLRENEDFV 194
                    99********99879*********999****999955666899****************999987.899999************765444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.5E-14106194IPR015300DNA-binding pseudobarrel domain
PfamPF023627.9E-9106194IPR003340B3 DNA binding domain
CDDcd100178.18E-15106195No hitNo description
SMARTSM010192.0E-10106211IPR003340B3 DNA binding domain
SuperFamilySSF1019364.9E-15106203IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.797107211IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MEPVYPEELK EDTAAALTLS SLKHTKFDKK TLSTLHAMKS NFLNHRPSSL TSQPQVQDFP  60
GSRAIIRQLT GQPRSLLQLK IDNYRPADIP PIAKLKGQIG RCSKPFEKQL TSSDVRSDQS  120
RLTLNKAYVE RSILPLLNRE EGNLDDGIKV TIYDPEGNEY PMTLKMWASK VYVLMGGWKE  180
FYQKQKLREN EDFVTTWGGL AEFAVAGKNS TVARPPQVSA AEGAERRIIR YSVLLFACV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012085562.11e-145putative B3 domain-containing protein At4g03160
TrEMBLA0A067L9U61e-144A0A067L9U6_JATCU; Uncharacterized protein
STRINGcassava4.1_027543m6e-52(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41481936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20600.11e-17B3 family protein