PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S01486.20

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

LBD

Protein Properties

Length: 251aa MW: 27573.4 Da PI: 9.77

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S01486.20	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	99.4	3.4e-31	4	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg++++++++l+q++ Jcr4S01486.20 4 SCNGCRVLRKGCSENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWHLCQAA 99 6*********************************************************************************************** PP DUF260 92 aelallke 99 +e++l ++ Jcr4S01486.20 100 VEAVLKGT 107 *9988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038155	8.1E-90	1	245	IPR017414	LOB domain-containing protein 10/36/41
PROSITE profile	PS50891	17.002	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.7E-25	4	103	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSENCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLINAGPEH 60 LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWHLCQAAV EAVLKGTPIT PINSEAAANG 120 HGPPLKAYDI RHVSKDENSA ASNDLNRVKT RNRVRRVVKS KGSNNNNKPI VEPSARDELT 180 RSTSHESSVS HQSELAMVEG ESKETESMVS VETAEASMLL RAEPESVIKA TRKRRSTATI 240 TQVLEIARTW T

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	230	235	TRKRRS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012077976.1	1e-170	LOB domain-containing protein 40
Swissprot	Q9M886	1e-98	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A067KMA8	1e-169	A0A067KMA8_JATCU; Uncharacterized protein
STRING	cassava4.1_012667m	1e-148	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1546	34	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	1e-90	LOB domain-containing protein 41