PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01524.10
Common NameJCGZ_05452, LOC105628031
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB_related
Protein Properties Length: 160aa    MW: 18065 Da    PI: 4.5754
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01524.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.71.3e-081443129
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIar 29
                     +g+W++eEd +l+d+++++G+g +W + ++
    Jcr4S01524.10 14 KGPWSPEEDSKLKDYIEKYGTGgNWIALPQ 43
                     79********************99976665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.3E-11544IPR009057Homeodomain-like
SuperFamilySSF466891.4E-6844IPR009057Homeodomain-like
PROSITE profilePS500907.039947IPR017877Myb-like domain
PfamPF002497.5E-71443IPR001005SANT/Myb domain
CDDcd001672.88E-41638No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDSKLKDYIE KYGTGGNWIA LPQKADRIIC TLFASIGSSQ  60
ISYGGRDIKQ EEMGLQSLIS NGYEENQKFM LSYNNGSENL NQWAEKASGY FGEITTTNPL  120
EYDLEDVKQL ISSSSGSNNS NYNNLLIDES KTREKFMYYY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0347161e-173KM034716.1 Jatropha curcas clone JcMYB096 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012064720.13e-53transcription factor RAX2
TrEMBLA0A067LHA78e-52A0A067LHA7_JATCU; MYB family protein
STRINGcassava4.1_026964m2e-36(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-27myb domain protein 36
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]