PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S01525.30

Common Name

JCGZ_16042, LOC105630862

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

LBD

Protein Properties

Length: 210aa MW: 22584.8 Da PI: 8.589

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S01525.30	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	96.6	2.7e-30	2	102	1	96
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +C++C+vlr++C++ C+l+ ++ p++q +++ +++k+FG+s +++l++a+pe++r+++++sl++eA+ r+ +P++Gavg++++++++++q++ Jcr4S01525.30 2 SCNGCRVLRKGCSETCILRSCLhwittPEAQGNATLFLAKFFGRSDLMSLISAVPESQRPALFQSLLFEACGRTVNPINGAVGLLWSGNWHVCQAA 97 6*********************************************************************************************** PP DUF260 92 aelal 96 +e++l Jcr4S01525.30 98 VETVL 102 99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.579	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.4E-25	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MSCNGCRVLR KGCSETCILR SCLHWITTPE AQGNATLFLA KFFGRSDLMS LISAVPESQR 60 PALFQSLLFE ACGRTVNPIN GAVGLLWSGN WHVCQAAVET VLSGGILRPL PGILAGVLAP 120 NYNESSDSFS AEACRLRDVW TQSKPHVNVA SGNQASDLNL SLTPKLVASG KAGRKKRGKD 180 TMSSYTEESS ETTTFESSGG DRKKLLNLFV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012068238.1	1e-154	LOB domain-containing protein 38
Swissprot	Q9SN23	6e-70	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	A0A067LAV8	1e-153	A0A067LAV8_JATCU; Uncharacterized protein
STRING	cassava4.1_016184m	1e-134	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF721	34	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	3e-67	LOB domain-containing protein 38

Link Out ? help Back to Top
Entrez Gene	105630862

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]