PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01606.30
Common NameJCGZ_12605
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family bHLH
Protein Properties Length: 351aa    MW: 39360.1 Da    PI: 6.5147
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01606.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.63.9e-12175221455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  Jcr4S01606.30 175 DHVIAERKRREKLSQRFIALSAVVPGL-----KKMDKASVLGDAIKYLKQLQ 221
                    6999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.421171220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.5E-10175221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.7E-17175234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-17176238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.28E-13176225No hitNo description
SMARTSM003536.2E-15177226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MEDPAFNYPY QMNPLDYALD DLDFQSFSST NDQIFSPQTI QNFNYTLPIQ ENSQTSIERP  60
TKQLKTNSWN SGSCTTTDNN NSNNQIISSK ASPSSSSHII SFENLNNSSP APISQQFYGL  120
DSTTSTIIKP KSEFVGSNGS ANHNSSFFCQ AGSTYYPQGN KKTGAMSRTL SHAQDHVIAE  180
RKRREKLSQR FIALSAVVPG LKKMDKASVL GDAIKYLKQL QERVKTLEEQ SARKNMESVV  240
FVKKCQVYAD DESSSTDENC DSCSDQPLPE IEARVSEKDV LIRIHCEKQK GYLLKIFSEV  300
EKLHLNVINS SVLPFGNSTL DITVIAQMDS DFSMTMKDVV RNLRQALLKY M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-14175235869Transcription factor MYC2
5gnj_B4e-14175235869Transcription factor MYC2
5gnj_E4e-14175235869Transcription factor MYC2
5gnj_F4e-14175235869Transcription factor MYC2
5gnj_G4e-14175235869Transcription factor MYC2
5gnj_I4e-14175235869Transcription factor MYC2
5gnj_M4e-14175235869Transcription factor MYC2
5gnj_N4e-14175235869Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179184ERKRRE
2180185RKRREK
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012079597.10.0transcription factor bHLH18
SwissprotQ9T0725e-74BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A067KJZ80.0A0A067KJZ8_JATCU; Uncharacterized protein
STRINGcassava4.1_010938m1e-163(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.15e-76bHLH family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]