PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01613.20
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family WRKY
Protein Properties Length: 210aa    MW: 23605.2 Da    PI: 4.85
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01613.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY50.83.3e-1655971959
                   SS-E.EEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY 19 efpr.sYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                   ++ r sYYrC+s  gC ++k+vers++dp++++i Y+geH h 
  Jcr4S01613.20 55 KTVRgSYYRCSSLkGCLARKQVERSSSDPSIFIINYTGEHSHA 97
                   444438*****998****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182903.66E-135499IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.9E-155499IPR003657WRKY domain
PfamPF031062.5E-125596IPR003657WRKY domain
SMARTSM007747.6E-95598IPR003657WRKY domain
PROSITE profilePS5081117.3166099IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MVEAFFGECS YQLPKEQNRE RECSYQLLKA DNIDHWAAHS GRGLLGGLQS LPENKTVRGS  60
YYRCSSLKGC LARKQVERSS SDPSIFIINY TGEHSHAHPT RRNSLAGSTR IKSTMAKQAV  120
AINEPNNMQN IKKDETFPSS STTPSMTSTE EDQLMQNVRI KNEEEEQVLD DGGSNEIPMQ  180
DIVFTDDMFP SLEDFEGLFN MDHQFAATVA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4852970.0KC485297.1 Jatropha curcas WRKY transcription factor 45 (WRKY45) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012087205.11e-107probable WRKY transcription factor 27 isoform X1
TrEMBLS5CFU91e-108S5CFU9_JATCU; WRKY transcription factor 45
STRINGcassava4.1_028977m1e-60(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62173150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.12e-24WRKY family protein