PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S01613.40

Common Name

JCGZ_20534, LOC105646043, WRKY20

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

WRKY

Protein Properties

Length: 161aa MW: 18485 Da PI: 9.8654

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S01613.40	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.3	2e-30	82	140	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk+s + rsYYrCt+++C+vkk+++r ++d ++v++tYeg Hnh+ Jcr4S01613.40 82 LDDGYRWRKYGQKVVKNSIHQRSYYRCTQHTCNVKKQIQRLSKDSSIVVTTYEGIHNHP 140 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.1E-31	69	140	IPR003657	WRKY domain
SuperFamily	SSF118290	2.62E-27	75	141	IPR003657	WRKY domain
PROSITE profile	PS50811	27.887	77	142	IPR003657	WRKY domain
SMART	SM00774	4.4E-35	82	141	IPR003657	WRKY domain
Pfam	PF03106	2.4E-24	83	140	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
MATHNQLGQE IDQFAPSSDI DWVSLLSGSL KFGDQNHHQP PVARDNIGEN VNTNKIKKGG 60 CKAKRVVPQR IAFHTRSADD ILDDGYRWRK YGQKVVKNSI HQRSYYRCTQ HTCNVKKQIQ 120 RLSKDSSIVV TTYEGIHNHP CEKVMETLSP LLRELQFLSR I

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-23	70	139	2	71	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC485272	1e-172	KC485272.1 Jatropha curcas WRKY transcription factor 20 (WRKY20) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012087204.1	1e-119	probable WRKY transcription factor 43
Swissprot	Q8VWQ4	3e-56	WRK56_ARATH; Probable WRKY transcription factor 56
TrEMBL	S5CK97	1e-118	S5CK97_JATCU; WRKY transcription factor 20
STRING	XP_002509864.1	1e-78	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3227	34	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64000.1	1e-58	WRKY DNA-binding protein 56

Link Out ? help Back to Top
Entrez Gene	105646043

Publications ? help Back to Top
Xiong W, et al. Genome-wide analysis of the WRKY gene family in physic nut (Jatropha curcas L.). Gene, 2013. 524(2): p. 124-32 [PMID:23644253] Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]