PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01624.10
Common NameJCGZ_21804, LOC105650209
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C2H2
Protein Properties Length: 158aa    MW: 17925.2 Da    PI: 4.5938
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01624.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.000163052123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   y+C  C++ F++   L  H++ H
  Jcr4S01624.10 30 YECVFCKRGFTTAQALGGHMNIH 52
                   99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.43E-62857No hitNo description
Gene3DG3DSA:3.30.160.603.4E-42856IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.0113057IPR007087Zinc finger, C2H2
PROSITE patternPS0002803252IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MESNLHEHSK TSSCEEETDQ SNEVRTGRSY ECVFCKRGFT TAQALGGHMN IHRKDRTNNS  60
SKSNIRSSPA KHIDGGYSYA SLSGDSAIQS YTPAQHQEDT DDLYVQSPQL LNHFQDDWMR  120
NLSLQIGPSN LDLDDNKEKN EEDDDELDLE LRLGHHDP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012092471.18e-94transcriptional regulator SUPERMAN
TrEMBLA0A067JEZ52e-92A0A067JEZ5_JATCU; Uncharacterized protein
STRINGcassava4.1_033324m5e-50(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16863073
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.15e-15C2H2 family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]