PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S01657.60

Common Name

JCGZ_23747, LOC105629392

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

NAC

Protein Properties

Length: 248aa MW: 29299.3 Da PI: 6.374

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S01657.60	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	91.2	1.8e-28	2	127	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 +p GfrF+Ptdeel+ + L kk+++++++l ++i +++iy+ eP++L+ ++ +a +++e y+++kr++ + + + +g Wkat + k+v++ Jcr4S01657.60 2 VPHGFRFNPTDEELI-QILDKKASNQEMPL-HFIIHANIYDNEPQHLQwSHSEAiGNDERYYYCKRENDS------REVSGRGWWKATSHVKKVHV 89 589**********.88********.889999******9543333377799*98853......347789********** PP NAM 95 kkgelvglkktLvfy.....kgrapkgektdWvmheyrl 128 ++ l+g k+ L+f+ ++++++ kt+W+mhey+l Jcr4S01657.60 90 -SKDLIGYKRPLTFHkykdqLKNRNNAIKTNWIMHEYSL 127 .999*******5554426777889*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	33.316	2	142	IPR003441	NAC domain
SuperFamily	SSF101941	3.14E-34	2	142	IPR003441	NAC domain
Pfam	PF02365	4.2E-18	3	127	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MVPHGFRFNP TDEELIQILD KKASNQEMPL HFIIHANIYD NEPQHLQWSH SEAIGNDERY 60 YYCKRENDSR EVSGRGWWKA TSHVKKVHVS KDLIGYKRPL TFHKYKDQLK NRNNAIKTNW 120 IMHEYSLQSK ETEWRLCKIK YKGKPSIQED MENIRSTLLH QATTTTEEAG TTSMNTQSGS 180 NNREQDKQDE PSVIALDNAG HHQADYYWNL QEQIPETQYD MSSGSNYYFS EQLDPSYSEQ 240 QFPSLWSW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	6e-20	2	149	20	174	NAC domain-containing protein 19
3swm_B	6e-20	2	149	20	174	NAC domain-containing protein 19
3swm_C	6e-20	2	149	20	174	NAC domain-containing protein 19
3swm_D	6e-20	2	149	20	174	NAC domain-containing protein 19
3swp_A	6e-20	2	149	20	174	NAC domain-containing protein 19
3swp_B	6e-20	2	149	20	174	NAC domain-containing protein 19
3swp_C	6e-20	2	149	20	174	NAC domain-containing protein 19
3swp_D	6e-20	2	149	20	174	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC775369	0.0	KC775369.1 Jatropha curcas NAC transcription factor 091 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012066377.1	1e-178	NAC domain-containing protein 83
TrEMBL	R4N5T7	1e-177	R4N5T7_JATCU; NAC transcription factor 091
STRING	cassava4.1_027454m	1e-110	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15526	6	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52890.1	8e-21	NAC domain containing protein 19

Link Out ? help Back to Top
Entrez Gene	105629392

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971] Wu Z, et al. Genome-Wide Analysis of the NAC Gene Family in Physic Nut (Jatropha curcas L.). PLoS ONE, 2015. 10(6): p. e0131890 [PMID:26125188]