PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01662.80
Common NameJCGZ_13302, LOC105639337
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C3H
Protein Properties Length: 558aa    MW: 63180.4 Da    PI: 6.2934
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01662.80genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.31.2e-07110133327
                    S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                    t++C f++  G+C+ GdrC+F+Hgp
  Jcr4S01662.80 110 TVPCYFYFS-GFCNKGDRCSFMHGP 133
                    99***9*99.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF156631.6E-11663No hitNo description
PROSITE profilePS5010310.099635IPR000571Zinc finger, CCCH-type
SMARTSM003560.045734IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.4693763IPR000571Zinc finger, CCCH-type
SMARTSM003561.93962IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.619107134IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-6107132IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-4107133IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-6109133IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-6110134IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MEEELQKRNT DCVYFLASPL TCKKGMECEY RHNEIARLNP RDCWYWLAGN CLNPTCGFRH  60
PNVVIETVDT TGISNGIVLL RYVLQEMPLE NHAEAPSESE SSSVHGNKST VPCYFYFSGF  120
CNKGDRCSFM HGPDVNTPTG VSGNSSSVIN EGNPLDNRTS VGNDILSVAT ETYANPSEMA  180
PKAVTDLKLQ PKENIQLPAP KNIVVQSPSP QIAVSHCEEA VTVRSDFLLQ ADSFIQSRSN  240
ICSDQSSEDQ MDDCVEPEER WESSPGFDVL VDDKSENIGY EDDQDYLLAL DREHRELNNH  300
FLGYDFEDLV EYDPTYCEAE AMYEGDIYDS FDCVNNVHII DDIENGSGRS RSRVLDSLLS  360
RKRKILPVEL AINDRRVVDL RERLRKHRVI HGHPVIRSSR RQDSSRLIDR SRERTRSVSR  420
RLDGRLASEV GKNAVESHGD NRTLLNGDNQ RGWLRQSRSC RSRQRHKEKR LAKRQFLSSE  480
VPRKPVSRER KSTRASIEFS GPKTLAQIKE EKKKAEGNGD GIGKTGNSSR MALADFEGPK  540
PLSEILKDKR RMGSVQDF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012078749.10.0zinc finger CCCH domain-containing protein 34 isoform X1
TrEMBLA0A067K8E70.0A0A067K8E7_JATCU; Uncharacterized protein
STRINGcassava4.1_005162m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130921823
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]